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ProkBERT Training Registry

JSON-backed training registry for ProkBERT and related nucleotide foundation models.

Files:

  • basemodels.json: model metadata and tokenizer dispatch.
  • default_training_parameters.json: default finetuning parameters by model and sequence-length range.
  • finetuning_task.json: placeholder task mapping from the workbook.
  • task.json: empty sheet placeholder preserved from the workbook.
  • manifest.json: simple schema and file manifest.

Conventions:

  • model_id is the canonical short internal model identifier.
  • basemodel is preserved from the original workbook.
  • seq_length_min / seq_length_max are raw sequence-length ranges.
  • max_token_length is the model-facing token-length cap used by training defaults.

This dataset is intended to be consumed directly from the Hugging Face Hub by the ProkBERT helper utilities.

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