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ossf__fuzz-introspector
4867924b714a7789f94fbcde53713a29ceab7272
post-processing/analyses/fuzz_calltree_analysis.py
inproject
MergedProjectProfile
true
class
14
19
false
true
[ "FuzzerProfile", "List", "MergedProjectProfile", "logger", "None", "add_func_to_reached_and_clone", "FunctionProfile", "load_all_profiles", "read_fuzzer_data_file_to_profile", "Any", "Dict", "Optional", "Set", "Tuple" ]
[ { "name": "add_func_to_reached_and_clone", "type": "function" }, { "name": "Any", "type": "class" }, { "name": "copy", "type": "module" }, { "name": "Dict", "type": "class" }, { "name": "FunctionProfile", "type": "class" }, { "name": "fuzz_cfg_load", "type": "module" }, { "name": "fuzz_cov_load", "type": "module" }, { "name": "fuzz_utils", "type": "module" }, { "name": "FuzzerProfile", "type": "class" }, { "name": "List", "type": "class" }, { "name": "load_all_profiles", "type": "function" }, { "name": "logger", "type": "statement" }, { "name": "logging", "type": "module" }, { "name": "MergedProjectProfile", "type": "class" }, { "name": "Optional", "type": "class" }, { "name": "os", "type": "module" }, { "name": "read_fuzzer_data_file_to_profile", "type": "function" }, { "name": "Set", "type": "class" }, { "name": "Tuple", "type": "class" }, { "name": "__doc__", "type": "instance" }, { "name": "__file__", "type": "instance" }, { "name": "__name__", "type": "instance" }, { "name": "__package__", "type": "instance" } ]
# Copyright 2022 Fuzz Introspector Authors # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. """Logic related to calltree analysis""" import os import logging import json from typing import ( List, Tuple, Optional, Set, ) import fuzz_analysis import fuzz_data_loader import fuzz_utils import fuzz_cfg_load import fuzz_html_helpers # For pretty printing the html code: from bs4 import BeautifulSoup as bs logger = logging.getLogger(name=__name__) class FuzzCalltreeAnalysis(fuzz_analysis.AnalysisInterface): def __init__(self): self.name = "FuzzCalltreeAnalysis" logger.info("Creating FuzzCalltreeAnalysis") def analysis_func(self, toc_list: List[Tuple[str, str, int]], tables: List[str], project_profile: fuzz_data_loader.
[ "FuzzerProfile", "List", "MergedProjectProfile", "logger", "None", "add_func_to_reached_and_clone", "FunctionProfile", "load_all_profiles", "read_fuzzer_data_file_to_profile", "Any", "Dict", "Optional", "Set", "Tuple" ]
# Copyright 2022 Fuzz Introspector Authors # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. """Logic related to calltree analysis""" import os import logging import json from typing import ( List, Tuple, Optional, Set, ) import fuzz_analysis import fuzz_data_loader import fuzz_utils import fuzz_cfg_load import fuzz_html_helpers # For pretty printing the html code: from bs4 import BeautifulSoup as bs logger = logging.getLogger(name=__name__) class FuzzCalltreeAnalysis(fuzz_analysis.AnalysisInterface): def __init__(self): self.name = "FuzzCalltreeAnalysis" logger.info("Creating FuzzCalltreeAnalysis") def analysis_func(self, toc_list: List[Tuple[str, str, int]], tables: List[str], project_profile: fuzz_data_loader.
1
3
0
1,409
ossf__fuzz-introspector
4867924b714a7789f94fbcde53713a29ceab7272
post-processing/analyses/fuzz_calltree_analysis.py
inproject
FuzzerProfile
true
class
14
19
false
true
[ "FuzzerProfile", "MergedProjectProfile", "List", "logger", "None", "add_func_to_reached_and_clone", "FunctionProfile", "load_all_profiles", "read_fuzzer_data_file_to_profile", "Any", "Dict", "Optional", "Set", "Tuple" ]
[ { "name": "add_func_to_reached_and_clone", "type": "function" }, { "name": "Any", "type": "class" }, { "name": "copy", "type": "module" }, { "name": "Dict", "type": "class" }, { "name": "FunctionProfile", "type": "class" }, { "name": "fuzz_cfg_load", "type": "module" }, { "name": "fuzz_cov_load", "type": "module" }, { "name": "fuzz_utils", "type": "module" }, { "name": "FuzzerProfile", "type": "class" }, { "name": "List", "type": "class" }, { "name": "load_all_profiles", "type": "function" }, { "name": "logger", "type": "statement" }, { "name": "logging", "type": "module" }, { "name": "MergedProjectProfile", "type": "class" }, { "name": "Optional", "type": "class" }, { "name": "os", "type": "module" }, { "name": "read_fuzzer_data_file_to_profile", "type": "function" }, { "name": "Set", "type": "class" }, { "name": "Tuple", "type": "class" }, { "name": "__doc__", "type": "instance" }, { "name": "__file__", "type": "instance" }, { "name": "__name__", "type": "instance" }, { "name": "__package__", "type": "instance" } ]
# Copyright 2022 Fuzz Introspector Authors # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. """Logic related to calltree analysis""" import os import logging import json from typing import ( List, Tuple, Optional, Set, ) import fuzz_analysis import fuzz_data_loader import fuzz_utils import fuzz_cfg_load import fuzz_html_helpers # For pretty printing the html code: from bs4 import BeautifulSoup as bs logger = logging.getLogger(name=__name__) class FuzzCalltreeAnalysis(fuzz_analysis.AnalysisInterface): def __init__(self): self.name = "FuzzCalltreeAnalysis" logger.info("Creating FuzzCalltreeAnalysis") def analysis_func(self, toc_list: List[Tuple[str, str, int]], tables: List[str], project_profile: fuzz_data_loader.MergedProjectProfile, profiles: List[fuzz_data_loader.
[ "FuzzerProfile", "MergedProjectProfile", "List", "logger", "None", "add_func_to_reached_and_clone", "FunctionProfile", "load_all_profiles", "read_fuzzer_data_file_to_profile", "Any", "Dict", "Optional", "Set", "Tuple" ]
# Copyright 2022 Fuzz Introspector Authors # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. """Logic related to calltree analysis""" import os import logging import json from typing import ( List, Tuple, Optional, Set, ) import fuzz_analysis import fuzz_data_loader import fuzz_utils import fuzz_cfg_load import fuzz_html_helpers # For pretty printing the html code: from bs4 import BeautifulSoup as bs logger = logging.getLogger(name=__name__) class FuzzCalltreeAnalysis(fuzz_analysis.AnalysisInterface): def __init__(self): self.name = "FuzzCalltreeAnalysis" logger.info("Creating FuzzCalltreeAnalysis") def analysis_func(self, toc_list: List[Tuple[str, str, int]], tables: List[str], project_profile: fuzz_data_loader.MergedProjectProfile, profiles: List[fuzz_data_loader.
2
5
0
2,009
ossf__fuzz-introspector
4867924b714a7789f94fbcde53713a29ceab7272
post-processing/analyses/fuzz_calltree_analysis.py
inproject
extract_all_callsites
true
function
8
9
false
true
[ "extract_all_callsites", "CalltreeCallsite", "List", "logger", "Optional", "data_file_read_calltree", "extract_all_callsites_recursive", "print_ctcs_tree" ]
[ { "name": "CalltreeCallsite", "type": "class" }, { "name": "data_file_read_calltree", "type": "function" }, { "name": "extract_all_callsites", "type": "function" }, { "name": "extract_all_callsites_recursive", "type": "function" }, { "name": "List", "type": "class" }, { "name": "logger", "type": "statement" }, { "name": "logging", "type": "module" }, { "name": "Optional", "type": "class" }, { "name": "print_ctcs_tree", "type": "function" }, { "name": "__doc__", "type": "instance" }, { "name": "__file__", "type": "instance" }, { "name": "__name__", "type": "instance" }, { "name": "__package__", "type": "instance" } ]
# Copyright 2022 Fuzz Introspector Authors # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. """Logic related to calltree analysis""" import os import logging import json from typing import ( List, Tuple, Optional, Set, ) import fuzz_analysis import fuzz_data_loader import fuzz_utils import fuzz_cfg_load import fuzz_html_helpers # For pretty printing the html code: from bs4 import BeautifulSoup as bs logger = logging.getLogger(name=__name__) class FuzzCalltreeAnalysis(fuzz_analysis.AnalysisInterface): def __init__(self): self.name = "FuzzCalltreeAnalysis" logger.info("Creating FuzzCalltreeAnalysis") def analysis_func(self, toc_list: List[Tuple[str, str, int]], tables: List[str], project_profile: fuzz_data_loader.MergedProjectProfile, profiles: List[fuzz_data_loader.FuzzerProfile], basefolder: str, coverage_url: str, conclusions) -> str: """ Creates the HTML of the calltree. Returns the HTML as a string. """ logger.info("Not implemented") return "" def create_calltree(self, profile: fuzz_data_loader.FuzzerProfile) -> str: logger.info("In calltree") # Generate HTML for the calltree calltree_html_string = "<div class='section-wrapper'>" calltree_html_string += "<h1>Fuzzer calltree</h1>" nodes = fuzz_cfg_load.
[ "extract_all_callsites", "CalltreeCallsite", "List", "logger", "Optional", "data_file_read_calltree", "extract_all_callsites_recursive", "print_ctcs_tree" ]
2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. """Logic related to calltree analysis""" import os import logging import json from typing import ( List, Tuple, Optional, Set, ) import fuzz_analysis import fuzz_data_loader import fuzz_utils import fuzz_cfg_load import fuzz_html_helpers # For pretty printing the html code: from bs4 import BeautifulSoup as bs logger = logging.getLogger(name=__name__) class FuzzCalltreeAnalysis(fuzz_analysis.AnalysisInterface): def __init__(self): self.name = "FuzzCalltreeAnalysis" logger.info("Creating FuzzCalltreeAnalysis") def analysis_func(self, toc_list: List[Tuple[str, str, int]], tables: List[str], project_profile: fuzz_data_loader.MergedProjectProfile, profiles: List[fuzz_data_loader.FuzzerProfile], basefolder: str, coverage_url: str, conclusions) -> str: """ Creates the HTML of the calltree. Returns the HTML as a string. """ logger.info("Not implemented") return "" def create_calltree(self, profile: fuzz_data_loader.FuzzerProfile) -> str: logger.info("In calltree") # Generate HTML for the calltree calltree_html_string = "<div class='section-wrapper'>" calltree_html_string += "<h1>Fuzzer calltree</h1>" nodes = fuzz_cfg_load.
4
7
0
2,166
ossf__fuzz-introspector
4867924b714a7789f94fbcde53713a29ceab7272
post-processing/analyses/fuzz_calltree_analysis.py
inproject
demangle_cpp_func
true
function
13
18
false
true
[ "List", "logger", "Optional", "demangle_cpp_func", "scan_executables_for_fuzz_introspector_logs", "data_file_read_yaml", "get_all_files_in_tree_with_regex", "get_target_coverage_url", "longest_common_prefix", "normalise_str", "safe_decode", "Any", "Dict" ]
[ { "name": "Any", "type": "class" }, { "name": "cxxfilt", "type": "module" }, { "name": "data_file_read_yaml", "type": "function" }, { "name": "demangle_cpp_func", "type": "function" }, { "name": "Dict", "type": "class" }, { "name": "get_all_files_in_tree_with_regex", "type": "function" }, { "name": "get_target_coverage_url", "type": "function" }, { "name": "List", "type": "class" }, { "name": "logger", "type": "statement" }, { "name": "logging", "type": "module" }, { "name": "longest_common_prefix", "type": "function" }, { "name": "normalise_str", "type": "function" }, { "name": "Optional", "type": "class" }, { "name": "os", "type": "module" }, { "name": "re", "type": "module" }, { "name": "safe_decode", "type": "function" }, { "name": "scan_executables_for_fuzz_introspector_logs", "type": "function" }, { "name": "yaml", "type": "module" }, { "name": "__doc__", "type": "instance" }, { "name": "__file__", "type": "instance" }, { "name": "__name__", "type": "instance" }, { "name": "__package__", "type": "instance" } ]
# Copyright 2022 Fuzz Introspector Authors # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. """Logic related to calltree analysis""" import os import logging import json from typing import ( List, Tuple, Optional, Set, ) import fuzz_analysis import fuzz_data_loader import fuzz_utils import fuzz_cfg_load import fuzz_html_helpers # For pretty printing the html code: from bs4 import BeautifulSoup as bs logger = logging.getLogger(name=__name__) class FuzzCalltreeAnalysis(fuzz_analysis.AnalysisInterface): def __init__(self): self.name = "FuzzCalltreeAnalysis" logger.info("Creating FuzzCalltreeAnalysis") def analysis_func(self, toc_list: List[Tuple[str, str, int]], tables: List[str], project_profile: fuzz_data_loader.MergedProjectProfile, profiles: List[fuzz_data_loader.FuzzerProfile], basefolder: str, coverage_url: str, conclusions) -> str: """ Creates the HTML of the calltree. Returns the HTML as a string. """ logger.info("Not implemented") return "" def create_calltree(self, profile: fuzz_data_loader.FuzzerProfile) -> str: logger.info("In calltree") # Generate HTML for the calltree calltree_html_string = "<div class='section-wrapper'>" calltree_html_string += "<h1>Fuzzer calltree</h1>" nodes = fuzz_cfg_load.extract_all_callsites(profile.function_call_depths) for i in range(len(nodes)): node = nodes[i] demangled_name = fuzz_utils.
[ "List", "logger", "Optional", "demangle_cpp_func", "scan_executables_for_fuzz_introspector_logs", "data_file_read_yaml", "get_all_files_in_tree_with_regex", "get_target_coverage_url", "longest_common_prefix", "normalise_str", "safe_decode", "Any", "Dict" ]
.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. """Logic related to calltree analysis""" import os import logging import json from typing import ( List, Tuple, Optional, Set, ) import fuzz_analysis import fuzz_data_loader import fuzz_utils import fuzz_cfg_load import fuzz_html_helpers # For pretty printing the html code: from bs4 import BeautifulSoup as bs logger = logging.getLogger(name=__name__) class FuzzCalltreeAnalysis(fuzz_analysis.AnalysisInterface): def __init__(self): self.name = "FuzzCalltreeAnalysis" logger.info("Creating FuzzCalltreeAnalysis") def analysis_func(self, toc_list: List[Tuple[str, str, int]], tables: List[str], project_profile: fuzz_data_loader.MergedProjectProfile, profiles: List[fuzz_data_loader.FuzzerProfile], basefolder: str, coverage_url: str, conclusions) -> str: """ Creates the HTML of the calltree. Returns the HTML as a string. """ logger.info("Not implemented") return "" def create_calltree(self, profile: fuzz_data_loader.FuzzerProfile) -> str: logger.info("In calltree") # Generate HTML for the calltree calltree_html_string = "<div class='section-wrapper'>" calltree_html_string += "<h1>Fuzzer calltree</h1>" nodes = fuzz_cfg_load.extract_all_callsites(profile.function_call_depths) for i in range(len(nodes)): node = nodes[i] demangled_name = fuzz_utils.
5
8
0
2,189
ossf__fuzz-introspector
4867924b714a7789f94fbcde53713a29ceab7272
post-processing/analyses/fuzz_calltree_analysis.py
inproject
dst_function_name
true
statement
17
17
false
true
[ "depth", "cov_ct_idx", "cov_forward_reds", "cov_largest_blocked_func", "cov_link", "children", "cov_callsite_link", "cov_color", "cov_hitcount", "cov_parent", "dst_function_name", "dst_function_source_file", "hitcount", "parent_calltree_callsite", "src_function_name", "src_function_source_file", "src_linenumber", "__init__", "__annotations__", "__class__", "__delattr__", "__dict__", "__dir__", "__eq__", "__format__", "__getattribute__", "__hash__", "__init_subclass__", "__ne__", "__new__", "__reduce__", "__reduce_ex__", "__repr__", "__setattr__", "__sizeof__", "__str__", "__subclasshook__", "__doc__", "__module__" ]
[ { "name": "children", "type": "statement" }, { "name": "cov_callsite_link", "type": "statement" }, { "name": "cov_color", "type": "statement" }, { "name": "cov_ct_idx", "type": "statement" }, { "name": "cov_forward_reds", "type": "statement" }, { "name": "cov_hitcount", "type": "statement" }, { "name": "cov_largest_blocked_func", "type": "statement" }, { "name": "cov_link", "type": "statement" }, { "name": "cov_parent", "type": "statement" }, { "name": "depth", "type": "statement" }, { "name": "dst_function_name", "type": "statement" }, { "name": "dst_function_source_file", "type": "statement" }, { "name": "hitcount", "type": "statement" }, { "name": "parent_calltree_callsite", "type": "statement" }, { "name": "src_function_name", "type": "statement" }, { "name": "src_function_source_file", "type": "statement" }, { "name": "src_linenumber", "type": "statement" }, { "name": "__annotations__", "type": "statement" }, { "name": "__class__", "type": "property" }, { "name": "__delattr__", "type": "function" }, { "name": "__dict__", "type": "statement" }, { "name": "__dir__", "type": "function" }, { "name": "__doc__", "type": "statement" }, { "name": "__eq__", "type": "function" }, { "name": "__format__", "type": "function" }, { "name": "__getattribute__", "type": "function" }, { "name": "__hash__", "type": "function" }, { "name": "__init__", "type": "function" }, { "name": "__init_subclass__", "type": "function" }, { "name": "__module__", "type": "statement" }, { "name": "__ne__", "type": "function" }, { "name": "__new__", "type": "function" }, { "name": "__reduce__", "type": "function" }, { "name": "__reduce_ex__", "type": "function" }, { "name": "__repr__", "type": "function" }, { "name": "__setattr__", "type": "function" }, { "name": "__sizeof__", "type": "function" }, { "name": "__slots__", "type": "statement" }, { "name": "__str__", "type": "function" } ]
# Copyright 2022 Fuzz Introspector Authors # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. """Logic related to calltree analysis""" import os import logging import json from typing import ( List, Tuple, Optional, Set, ) import fuzz_analysis import fuzz_data_loader import fuzz_utils import fuzz_cfg_load import fuzz_html_helpers # For pretty printing the html code: from bs4 import BeautifulSoup as bs logger = logging.getLogger(name=__name__) class FuzzCalltreeAnalysis(fuzz_analysis.AnalysisInterface): def __init__(self): self.name = "FuzzCalltreeAnalysis" logger.info("Creating FuzzCalltreeAnalysis") def analysis_func(self, toc_list: List[Tuple[str, str, int]], tables: List[str], project_profile: fuzz_data_loader.MergedProjectProfile, profiles: List[fuzz_data_loader.FuzzerProfile], basefolder: str, coverage_url: str, conclusions) -> str: """ Creates the HTML of the calltree. Returns the HTML as a string. """ logger.info("Not implemented") return "" def create_calltree(self, profile: fuzz_data_loader.FuzzerProfile) -> str: logger.info("In calltree") # Generate HTML for the calltree calltree_html_string = "<div class='section-wrapper'>" calltree_html_string += "<h1>Fuzzer calltree</h1>" nodes = fuzz_cfg_load.extract_all_callsites(profile.function_call_depths) for i in range(len(nodes)): node = nodes[i] demangled_name = fuzz_utils.demangle_cpp_func(node.
[ "depth", "cov_ct_idx", "cov_forward_reds", "cov_largest_blocked_func", "cov_link", "children", "cov_callsite_link", "cov_color", "cov_hitcount", "cov_parent", "dst_function_name", "dst_function_source_file", "hitcount", "parent_calltree_callsite", "src_function_name", "src_function_source_file", "src_linenumber" ]
.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. """Logic related to calltree analysis""" import os import logging import json from typing import ( List, Tuple, Optional, Set, ) import fuzz_analysis import fuzz_data_loader import fuzz_utils import fuzz_cfg_load import fuzz_html_helpers # For pretty printing the html code: from bs4 import BeautifulSoup as bs logger = logging.getLogger(name=__name__) class FuzzCalltreeAnalysis(fuzz_analysis.AnalysisInterface): def __init__(self): self.name = "FuzzCalltreeAnalysis" logger.info("Creating FuzzCalltreeAnalysis") def analysis_func(self, toc_list: List[Tuple[str, str, int]], tables: List[str], project_profile: fuzz_data_loader.MergedProjectProfile, profiles: List[fuzz_data_loader.FuzzerProfile], basefolder: str, coverage_url: str, conclusions) -> str: """ Creates the HTML of the calltree. Returns the HTML as a string. """ logger.info("Not implemented") return "" def create_calltree(self, profile: fuzz_data_loader.FuzzerProfile) -> str: logger.info("In calltree") # Generate HTML for the calltree calltree_html_string = "<div class='section-wrapper'>" calltree_html_string += "<h1>Fuzzer calltree</h1>" nodes = fuzz_cfg_load.extract_all_callsites(profile.function_call_depths) for i in range(len(nodes)): node = nodes[i] demangled_name = fuzz_utils.demangle_cpp_func(node.
6
10
0
2,668
ossf__fuzz-introspector
4867924b714a7789f94fbcde53713a29ceab7272
post-processing/analyses/fuzz_calltree_analysis.py
random
cov_callsite_link
true
statement
17
17
false
true
[ "cov_link", "depth", "cov_color", "cov_ct_idx", "cov_callsite_link", "children", "cov_forward_reds", "cov_hitcount", "cov_largest_blocked_func", "cov_parent", "dst_function_name", "dst_function_source_file", "hitcount", "parent_calltree_callsite", "src_function_name", "src_function_source_file", "src_linenumber", "__init__", "__annotations__", "__class__", "__delattr__", "__dict__", "__dir__", "__eq__", "__format__", "__getattribute__", "__hash__", "__init_subclass__", "__ne__", "__new__", "__reduce__", "__reduce_ex__", "__repr__", "__setattr__", "__sizeof__", "__str__", "__subclasshook__", "__doc__", "__module__" ]
[ { "name": "children", "type": "statement" }, { "name": "cov_callsite_link", "type": "statement" }, { "name": "cov_color", "type": "statement" }, { "name": "cov_ct_idx", "type": "statement" }, { "name": "cov_forward_reds", "type": "statement" }, { "name": "cov_hitcount", "type": "statement" }, { "name": "cov_largest_blocked_func", "type": "statement" }, { "name": "cov_link", "type": "statement" }, { "name": "cov_parent", "type": "statement" }, { "name": "depth", "type": "statement" }, { "name": "dst_function_name", "type": "statement" }, { "name": "dst_function_source_file", "type": "statement" }, { "name": "hitcount", "type": "statement" }, { "name": "parent_calltree_callsite", "type": "statement" }, { "name": "src_function_name", "type": "statement" }, { "name": "src_function_source_file", "type": "statement" }, { "name": "src_linenumber", "type": "statement" }, { "name": "__annotations__", "type": "statement" }, { "name": "__class__", "type": "property" }, { "name": "__delattr__", "type": "function" }, { "name": "__dict__", "type": "statement" }, { "name": "__dir__", "type": "function" }, { "name": "__doc__", "type": "statement" }, { "name": "__eq__", "type": "function" }, { "name": "__format__", "type": "function" }, { "name": "__getattribute__", "type": "function" }, { "name": "__hash__", "type": "function" }, { "name": "__init__", "type": "function" }, { "name": "__init_subclass__", "type": "function" }, { "name": "__module__", "type": "statement" }, { "name": "__ne__", "type": "function" }, { "name": "__new__", "type": "function" }, { "name": "__reduce__", "type": "function" }, { "name": "__reduce_ex__", "type": "function" }, { "name": "__repr__", "type": "function" }, { "name": "__setattr__", "type": "function" }, { "name": "__sizeof__", "type": "function" }, { "name": "__slots__", "type": "statement" }, { "name": "__str__", "type": "function" } ]
# Copyright 2022 Fuzz Introspector Authors # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. """Logic related to calltree analysis""" import os import logging import json from typing import ( List, Tuple, Optional, Set, ) import fuzz_analysis import fuzz_data_loader import fuzz_utils import fuzz_cfg_load import fuzz_html_helpers # For pretty printing the html code: from bs4 import BeautifulSoup as bs logger = logging.getLogger(name=__name__) class FuzzCalltreeAnalysis(fuzz_analysis.AnalysisInterface): def __init__(self): self.name = "FuzzCalltreeAnalysis" logger.info("Creating FuzzCalltreeAnalysis") def analysis_func(self, toc_list: List[Tuple[str, str, int]], tables: List[str], project_profile: fuzz_data_loader.MergedProjectProfile, profiles: List[fuzz_data_loader.FuzzerProfile], basefolder: str, coverage_url: str, conclusions) -> str: """ Creates the HTML of the calltree. Returns the HTML as a string. """ logger.info("Not implemented") return "" def create_calltree(self, profile: fuzz_data_loader.FuzzerProfile) -> str: logger.info("In calltree") # Generate HTML for the calltree calltree_html_string = "<div class='section-wrapper'>" calltree_html_string += "<h1>Fuzzer calltree</h1>" nodes = fuzz_cfg_load.extract_all_callsites(profile.function_call_depths) for i in range(len(nodes)): node = nodes[i] demangled_name = fuzz_utils.demangle_cpp_func(node.dst_function_name) # We may not want to show certain functions at times, e.g. libc functions # in case it bloats the calltree # libc_funcs = { "free" } libc_funcs: Set[str] = set() avoid = len([fn for fn in libc_funcs if fn in demangled_name]) > 0 if avoid: continue # Prepare strings needed in the HTML color_to_be = node.cov_color callsite_link = node.
[ "cov_link", "depth", "cov_color", "cov_ct_idx", "cov_callsite_link", "children", "cov_forward_reds", "cov_hitcount", "cov_largest_blocked_func", "cov_parent", "dst_function_name", "dst_function_source_file", "hitcount", "parent_calltree_callsite", "src_function_name", "src_function_source_file", "src_linenumber" ]
z_analysis import fuzz_data_loader import fuzz_utils import fuzz_cfg_load import fuzz_html_helpers # For pretty printing the html code: from bs4 import BeautifulSoup as bs logger = logging.getLogger(name=__name__) class FuzzCalltreeAnalysis(fuzz_analysis.AnalysisInterface): def __init__(self): self.name = "FuzzCalltreeAnalysis" logger.info("Creating FuzzCalltreeAnalysis") def analysis_func(self, toc_list: List[Tuple[str, str, int]], tables: List[str], project_profile: fuzz_data_loader.MergedProjectProfile, profiles: List[fuzz_data_loader.FuzzerProfile], basefolder: str, coverage_url: str, conclusions) -> str: """ Creates the HTML of the calltree. Returns the HTML as a string. """ logger.info("Not implemented") return "" def create_calltree(self, profile: fuzz_data_loader.FuzzerProfile) -> str: logger.info("In calltree") # Generate HTML for the calltree calltree_html_string = "<div class='section-wrapper'>" calltree_html_string += "<h1>Fuzzer calltree</h1>" nodes = fuzz_cfg_load.extract_all_callsites(profile.function_call_depths) for i in range(len(nodes)): node = nodes[i] demangled_name = fuzz_utils.demangle_cpp_func(node.dst_function_name) # We may not want to show certain functions at times, e.g. libc functions # in case it bloats the calltree # libc_funcs = { "free" } libc_funcs: Set[str] = set() avoid = len([fn for fn in libc_funcs if fn in demangled_name]) > 0 if avoid: continue # Prepare strings needed in the HTML color_to_be = node.cov_color callsite_link = node.
8
12
0
2,749
ossf__fuzz-introspector
4867924b714a7789f94fbcde53713a29ceab7272
post-processing/analyses/fuzz_calltree_analysis.py
infile
create_str_node_ctx_idx
true
function
7
7
false
true
[ "create_str_node_ctx_idx", "get_fuzz_blockers", "name", "create_fuzz_blocker_table", "html_create_dedicated_calltree_file", "__init__", "analysis_func", "create_calltree", "__annotations__", "__class__", "__delattr__", "__dict__", "__dir__", "__eq__", "__format__", "__getattribute__", "__hash__", "__init_subclass__", "__ne__", "__new__", "__reduce__", "__reduce_ex__", "__repr__", "__setattr__", "__sizeof__", "__slots__", "__str__", "__subclasshook__", "__doc__", "__module__" ]
[ { "name": "analysis_func", "type": "function" }, { "name": "create_calltree", "type": "function" }, { "name": "create_fuzz_blocker_table", "type": "function" }, { "name": "create_str_node_ctx_idx", "type": "function" }, { "name": "get_fuzz_blockers", "type": "function" }, { "name": "html_create_dedicated_calltree_file", "type": "function" }, { "name": "name", "type": "statement" }, { "name": "__annotations__", "type": "statement" }, { "name": "__class__", "type": "property" }, { "name": "__delattr__", "type": "function" }, { "name": "__dict__", "type": "statement" }, { "name": "__dir__", "type": "function" }, { "name": "__doc__", "type": "statement" }, { "name": "__eq__", "type": "function" }, { "name": "__format__", "type": "function" }, { "name": "__getattribute__", "type": "function" }, { "name": "__hash__", "type": "function" }, { "name": "__init__", "type": "function" }, { "name": "__init_subclass__", "type": "function" }, { "name": "__module__", "type": "statement" }, { "name": "__ne__", "type": "function" }, { "name": "__new__", "type": "function" }, { "name": "__reduce__", "type": "function" }, { "name": "__reduce_ex__", "type": "function" }, { "name": "__repr__", "type": "function" }, { "name": "__setattr__", "type": "function" }, { "name": "__sizeof__", "type": "function" }, { "name": "__slots__", "type": "statement" }, { "name": "__str__", "type": "function" } ]
# Copyright 2022 Fuzz Introspector Authors # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. """Logic related to calltree analysis""" import os import logging import json from typing import ( List, Tuple, Optional, Set, ) import fuzz_analysis import fuzz_data_loader import fuzz_utils import fuzz_cfg_load import fuzz_html_helpers # For pretty printing the html code: from bs4 import BeautifulSoup as bs logger = logging.getLogger(name=__name__) class FuzzCalltreeAnalysis(fuzz_analysis.AnalysisInterface): def __init__(self): self.name = "FuzzCalltreeAnalysis" logger.info("Creating FuzzCalltreeAnalysis") def analysis_func(self, toc_list: List[Tuple[str, str, int]], tables: List[str], project_profile: fuzz_data_loader.MergedProjectProfile, profiles: List[fuzz_data_loader.FuzzerProfile], basefolder: str, coverage_url: str, conclusions) -> str: """ Creates the HTML of the calltree. Returns the HTML as a string. """ logger.info("Not implemented") return "" def create_calltree(self, profile: fuzz_data_loader.FuzzerProfile) -> str: logger.info("In calltree") # Generate HTML for the calltree calltree_html_string = "<div class='section-wrapper'>" calltree_html_string += "<h1>Fuzzer calltree</h1>" nodes = fuzz_cfg_load.extract_all_callsites(profile.function_call_depths) for i in range(len(nodes)): node = nodes[i] demangled_name = fuzz_utils.demangle_cpp_func(node.dst_function_name) # We may not want to show certain functions at times, e.g. libc functions # in case it bloats the calltree # libc_funcs = { "free" } libc_funcs: Set[str] = set() avoid = len([fn for fn in libc_funcs if fn in demangled_name]) > 0 if avoid: continue # Prepare strings needed in the HTML color_to_be = node.cov_color callsite_link = node.cov_callsite_link link = node.cov_link ct_idx_str = self.
[ "create_str_node_ctx_idx", "get_fuzz_blockers", "name", "create_fuzz_blocker_table", "html_create_dedicated_calltree_file", "analysis_func", "create_calltree" ]
fuzz_html_helpers # For pretty printing the html code: from bs4 import BeautifulSoup as bs logger = logging.getLogger(name=__name__) class FuzzCalltreeAnalysis(fuzz_analysis.AnalysisInterface): def __init__(self): self.name = "FuzzCalltreeAnalysis" logger.info("Creating FuzzCalltreeAnalysis") def analysis_func(self, toc_list: List[Tuple[str, str, int]], tables: List[str], project_profile: fuzz_data_loader.MergedProjectProfile, profiles: List[fuzz_data_loader.FuzzerProfile], basefolder: str, coverage_url: str, conclusions) -> str: """ Creates the HTML of the calltree. Returns the HTML as a string. """ logger.info("Not implemented") return "" def create_calltree(self, profile: fuzz_data_loader.FuzzerProfile) -> str: logger.info("In calltree") # Generate HTML for the calltree calltree_html_string = "<div class='section-wrapper'>" calltree_html_string += "<h1>Fuzzer calltree</h1>" nodes = fuzz_cfg_load.extract_all_callsites(profile.function_call_depths) for i in range(len(nodes)): node = nodes[i] demangled_name = fuzz_utils.demangle_cpp_func(node.dst_function_name) # We may not want to show certain functions at times, e.g. libc functions # in case it bloats the calltree # libc_funcs = { "free" } libc_funcs: Set[str] = set() avoid = len([fn for fn in libc_funcs if fn in demangled_name]) > 0 if avoid: continue # Prepare strings needed in the HTML color_to_be = node.cov_color callsite_link = node.cov_callsite_link link = node.cov_link ct_idx_str = self.
10
13
0
2,782
ossf__fuzz-introspector
4867924b714a7789f94fbcde53713a29ceab7272
post-processing/analyses/fuzz_calltree_analysis.py
infile
cov_ct_idx
true
statement
17
17
false
true
[ "cov_ct_idx", "depth", "dst_function_name", "cov_forward_reds", "cov_link", "children", "cov_callsite_link", "cov_color", "cov_hitcount", "cov_largest_blocked_func", "cov_parent", "dst_function_source_file", "hitcount", "parent_calltree_callsite", "src_function_name", "src_function_source_file", "src_linenumber", "__init__", "__annotations__", "__class__", "__delattr__", "__dict__", "__dir__", "__eq__", "__format__", "__getattribute__", "__hash__", "__init_subclass__", "__ne__", "__new__", "__reduce__", "__reduce_ex__", "__repr__", "__setattr__", "__sizeof__", "__str__", "__subclasshook__", "__doc__", "__module__" ]
[ { "name": "children", "type": "statement" }, { "name": "cov_callsite_link", "type": "statement" }, { "name": "cov_color", "type": "statement" }, { "name": "cov_ct_idx", "type": "statement" }, { "name": "cov_forward_reds", "type": "statement" }, { "name": "cov_hitcount", "type": "statement" }, { "name": "cov_largest_blocked_func", "type": "statement" }, { "name": "cov_link", "type": "statement" }, { "name": "cov_parent", "type": "statement" }, { "name": "depth", "type": "statement" }, { "name": "dst_function_name", "type": "statement" }, { "name": "dst_function_source_file", "type": "statement" }, { "name": "hitcount", "type": "statement" }, { "name": "parent_calltree_callsite", "type": "statement" }, { "name": "src_function_name", "type": "statement" }, { "name": "src_function_source_file", "type": "statement" }, { "name": "src_linenumber", "type": "statement" }, { "name": "__annotations__", "type": "statement" }, { "name": "__class__", "type": "property" }, { "name": "__delattr__", "type": "function" }, { "name": "__dict__", "type": "statement" }, { "name": "__dir__", "type": "function" }, { "name": "__doc__", "type": "statement" }, { "name": "__eq__", "type": "function" }, { "name": "__format__", "type": "function" }, { "name": "__getattribute__", "type": "function" }, { "name": "__hash__", "type": "function" }, { "name": "__init__", "type": "function" }, { "name": "__init_subclass__", "type": "function" }, { "name": "__module__", "type": "statement" }, { "name": "__ne__", "type": "function" }, { "name": "__new__", "type": "function" }, { "name": "__reduce__", "type": "function" }, { "name": "__reduce_ex__", "type": "function" }, { "name": "__repr__", "type": "function" }, { "name": "__setattr__", "type": "function" }, { "name": "__sizeof__", "type": "function" }, { "name": "__slots__", "type": "statement" }, { "name": "__str__", "type": "function" } ]
# Copyright 2022 Fuzz Introspector Authors # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. """Logic related to calltree analysis""" import os import logging import json from typing import ( List, Tuple, Optional, Set, ) import fuzz_analysis import fuzz_data_loader import fuzz_utils import fuzz_cfg_load import fuzz_html_helpers # For pretty printing the html code: from bs4 import BeautifulSoup as bs logger = logging.getLogger(name=__name__) class FuzzCalltreeAnalysis(fuzz_analysis.AnalysisInterface): def __init__(self): self.name = "FuzzCalltreeAnalysis" logger.info("Creating FuzzCalltreeAnalysis") def analysis_func(self, toc_list: List[Tuple[str, str, int]], tables: List[str], project_profile: fuzz_data_loader.MergedProjectProfile, profiles: List[fuzz_data_loader.FuzzerProfile], basefolder: str, coverage_url: str, conclusions) -> str: """ Creates the HTML of the calltree. Returns the HTML as a string. """ logger.info("Not implemented") return "" def create_calltree(self, profile: fuzz_data_loader.FuzzerProfile) -> str: logger.info("In calltree") # Generate HTML for the calltree calltree_html_string = "<div class='section-wrapper'>" calltree_html_string += "<h1>Fuzzer calltree</h1>" nodes = fuzz_cfg_load.extract_all_callsites(profile.function_call_depths) for i in range(len(nodes)): node = nodes[i] demangled_name = fuzz_utils.demangle_cpp_func(node.dst_function_name) # We may not want to show certain functions at times, e.g. libc functions # in case it bloats the calltree # libc_funcs = { "free" } libc_funcs: Set[str] = set() avoid = len([fn for fn in libc_funcs if fn in demangled_name]) > 0 if avoid: continue # Prepare strings needed in the HTML color_to_be = node.cov_color callsite_link = node.cov_callsite_link link = node.cov_link ct_idx_str = self.create_str_node_ctx_idx(str(node.
[ "cov_ct_idx", "depth", "dst_function_name", "cov_forward_reds", "cov_link", "children", "cov_callsite_link", "cov_color", "cov_hitcount", "cov_largest_blocked_func", "cov_parent", "dst_function_source_file", "hitcount", "parent_calltree_callsite", "src_function_name", "src_function_source_file", "src_linenumber" ]
rinting the html code: from bs4 import BeautifulSoup as bs logger = logging.getLogger(name=__name__) class FuzzCalltreeAnalysis(fuzz_analysis.AnalysisInterface): def __init__(self): self.name = "FuzzCalltreeAnalysis" logger.info("Creating FuzzCalltreeAnalysis") def analysis_func(self, toc_list: List[Tuple[str, str, int]], tables: List[str], project_profile: fuzz_data_loader.MergedProjectProfile, profiles: List[fuzz_data_loader.FuzzerProfile], basefolder: str, coverage_url: str, conclusions) -> str: """ Creates the HTML of the calltree. Returns the HTML as a string. """ logger.info("Not implemented") return "" def create_calltree(self, profile: fuzz_data_loader.FuzzerProfile) -> str: logger.info("In calltree") # Generate HTML for the calltree calltree_html_string = "<div class='section-wrapper'>" calltree_html_string += "<h1>Fuzzer calltree</h1>" nodes = fuzz_cfg_load.extract_all_callsites(profile.function_call_depths) for i in range(len(nodes)): node = nodes[i] demangled_name = fuzz_utils.demangle_cpp_func(node.dst_function_name) # We may not want to show certain functions at times, e.g. libc functions # in case it bloats the calltree # libc_funcs = { "free" } libc_funcs: Set[str] = set() avoid = len([fn for fn in libc_funcs if fn in demangled_name]) > 0 if avoid: continue # Prepare strings needed in the HTML color_to_be = node.cov_color callsite_link = node.cov_callsite_link link = node.cov_link ct_idx_str = self.create_str_node_ctx_idx(str(node.
11
28
0
5,388
ossf__fuzz-introspector
4867924b714a7789f94fbcde53713a29ceab7272
post-processing/analyses/fuzz_calltree_analysis.py
inproject
FuzzerProfile
true
class
14
19
false
false
[ "FuzzerProfile", "MergedProjectProfile", "None", "List", "logger", "add_func_to_reached_and_clone", "FunctionProfile", "load_all_profiles", "read_fuzzer_data_file_to_profile", "Any", "Dict", "Optional", "Set", "Tuple" ]
[ { "name": "add_func_to_reached_and_clone", "type": "function" }, { "name": "Any", "type": "class" }, { "name": "copy", "type": "module" }, { "name": "Dict", "type": "class" }, { "name": "FunctionProfile", "type": "class" }, { "name": "fuzz_cfg_load", "type": "module" }, { "name": "fuzz_cov_load", "type": "module" }, { "name": "fuzz_utils", "type": "module" }, { "name": "FuzzerProfile", "type": "class" }, { "name": "List", "type": "class" }, { "name": "load_all_profiles", "type": "function" }, { "name": "logger", "type": "statement" }, { "name": "logging", "type": "module" }, { "name": "MergedProjectProfile", "type": "class" }, { "name": "Optional", "type": "class" }, { "name": "os", "type": "module" }, { "name": "read_fuzzer_data_file_to_profile", "type": "function" }, { "name": "Set", "type": "class" }, { "name": "Tuple", "type": "class" }, { "name": "__doc__", "type": "instance" }, { "name": "__file__", "type": "instance" }, { "name": "__name__", "type": "instance" }, { "name": "__package__", "type": "instance" } ]
# Copyright 2022 Fuzz Introspector Authors # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. """Logic related to calltree analysis""" import os import logging import json from typing import ( List, Tuple, Optional, Set, ) import fuzz_analysis import fuzz_data_loader import fuzz_utils import fuzz_cfg_load import fuzz_html_helpers # For pretty printing the html code: from bs4 import BeautifulSoup as bs logger = logging.getLogger(name=__name__) class FuzzCalltreeAnalysis(fuzz_analysis.AnalysisInterface): def __init__(self): self.name = "FuzzCalltreeAnalysis" logger.info("Creating FuzzCalltreeAnalysis") def analysis_func(self, toc_list: List[Tuple[str, str, int]], tables: List[str], project_profile: fuzz_data_loader.MergedProjectProfile, profiles: List[fuzz_data_loader.FuzzerProfile], basefolder: str, coverage_url: str, conclusions) -> str: """ Creates the HTML of the calltree. Returns the HTML as a string. """ logger.info("Not implemented") return "" def create_calltree(self, profile: fuzz_data_loader.FuzzerProfile) -> str: logger.info("In calltree") # Generate HTML for the calltree calltree_html_string = "<div class='section-wrapper'>" calltree_html_string += "<h1>Fuzzer calltree</h1>" nodes = fuzz_cfg_load.extract_all_callsites(profile.function_call_depths) for i in range(len(nodes)): node = nodes[i] demangled_name = fuzz_utils.demangle_cpp_func(node.dst_function_name) # We may not want to show certain functions at times, e.g. libc functions # in case it bloats the calltree # libc_funcs = { "free" } libc_funcs: Set[str] = set() avoid = len([fn for fn in libc_funcs if fn in demangled_name]) > 0 if avoid: continue # Prepare strings needed in the HTML color_to_be = node.cov_color callsite_link = node.cov_callsite_link link = node.cov_link ct_idx_str = self.create_str_node_ctx_idx(str(node.cov_ct_idx)) # Only display [function] link if we have, otherwhise show no [function] text. if node.dst_function_source_file.replace(" ", "") != "/": func_href = f"""<a href="{link}">[function]</a>""" else: func_href = "" if i > 0: previous_node = nodes[i - 1] if previous_node.depth == node.depth: calltree_html_string += "</div>" depth_diff = previous_node.depth - node.depth if depth_diff >= 1: closing_divs = "</div>" # To close "calltree-line-wrapper" closing_divs = "</div>" * (int(depth_diff) + 1) calltree_html_string += closing_divs calltree_html_string += f""" <div class="{color_to_be}-background coverage-line"> <span class="coverage-line-inner" data-calltree-idx="{ct_idx_str}"> {node.depth} <code class="language-clike"> {demangled_name} </code> <span class="coverage-line-filename"> {func_href} <a href="{callsite_link}"> [call site2] </a> <span class="calltree-idx">[calltree idx: {ct_idx_str}]</span> </span> </span> """ if i != len(nodes) - 1: next_node = nodes[i + 1] if next_node.depth > node.depth: calltree_html_string += f"""<div class="calltree-line-wrapper open level-{int(node.depth)}" style="padding-left: 16px">""" elif next_node.depth < node.depth: depth_diff = int(node.depth - next_node.depth) calltree_html_string += "</div>" * depth_diff calltree_html_string += "</div>" logger.info("Calltree created") # Write the HTML to a file called calltree_view_XX.html where XX is a counter. calltree_file_idx = 0 calltree_html_file = f"calltree_view_{calltree_file_idx}.html" while os.path.isfile(calltree_html_file): calltree_file_idx += 1 calltree_html_file = f"calltree_view_{calltree_file_idx}.html" self.html_create_dedicated_calltree_file( calltree_html_string, calltree_html_file, profile, ) return calltree_html_file def html_create_dedicated_calltree_file( self, calltree_html_string, filename, profile: fuzz_data_loader.
[ "FuzzerProfile", "MergedProjectProfile", "None", "List", "logger", "add_func_to_reached_and_clone", "FunctionProfile", "load_all_profiles", "read_fuzzer_data_file_to_profile", "Any", "Dict", "Optional", "Set", "Tuple" ]
" * (int(depth_diff) + 1) calltree_html_string += closing_divs calltree_html_string += f""" <div class="{color_to_be}-background coverage-line"> <span class="coverage-line-inner" data-calltree-idx="{ct_idx_str}"> {node.depth} <code class="language-clike"> {demangled_name} </code> <span class="coverage-line-filename"> {func_href} <a href="{callsite_link}"> [call site2] </a> <span class="calltree-idx">[calltree idx: {ct_idx_str}]</span> </span> </span> """ if i != len(nodes) - 1: next_node = nodes[i + 1] if next_node.depth > node.depth: calltree_html_string += f"""<div class="calltree-line-wrapper open level-{int(node.depth)}" style="padding-left: 16px">""" elif next_node.depth < node.depth: depth_diff = int(node.depth - next_node.depth) calltree_html_string += "</div>" * depth_diff calltree_html_string += "</div>" logger.info("Calltree created") # Write the HTML to a file called calltree_view_XX.html where XX is a counter. calltree_file_idx = 0 calltree_html_file = f"calltree_view_{calltree_file_idx}.html" while os.path.isfile(calltree_html_file): calltree_file_idx += 1 calltree_html_file = f"calltree_view_{calltree_file_idx}.html" self.html_create_dedicated_calltree_file( calltree_html_string, calltree_html_file, profile, ) return calltree_html_file def html_create_dedicated_calltree_file( self, calltree_html_string, filename, profile: fuzz_data_loader.
19
29
0
5,761
ossf__fuzz-introspector
4867924b714a7789f94fbcde53713a29ceab7272
post-processing/analyses/fuzz_calltree_analysis.py
inproject
html_get_header
true
function
9
9
false
true
[ "html_create_table_head", "html_table_add_row", "html_get_header", "html_get_navbar", "List", "html_add_header_with_link", "html_get_table_of_contents", "Any", "Tuple" ]
[ { "name": "Any", "type": "class" }, { "name": "html_add_header_with_link", "type": "function" }, { "name": "html_create_table_head", "type": "function" }, { "name": "html_get_header", "type": "function" }, { "name": "html_get_navbar", "type": "function" }, { "name": "html_get_table_of_contents", "type": "function" }, { "name": "html_table_add_row", "type": "function" }, { "name": "List", "type": "class" }, { "name": "Tuple", "type": "class" }, { "name": "__doc__", "type": "instance" }, { "name": "__file__", "type": "instance" }, { "name": "__name__", "type": "instance" }, { "name": "__package__", "type": "instance" } ]
# Copyright 2022 Fuzz Introspector Authors # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. """Logic related to calltree analysis""" import os import logging import json from typing import ( List, Tuple, Optional, Set, ) import fuzz_analysis import fuzz_data_loader import fuzz_utils import fuzz_cfg_load import fuzz_html_helpers # For pretty printing the html code: from bs4 import BeautifulSoup as bs logger = logging.getLogger(name=__name__) class FuzzCalltreeAnalysis(fuzz_analysis.AnalysisInterface): def __init__(self): self.name = "FuzzCalltreeAnalysis" logger.info("Creating FuzzCalltreeAnalysis") def analysis_func(self, toc_list: List[Tuple[str, str, int]], tables: List[str], project_profile: fuzz_data_loader.MergedProjectProfile, profiles: List[fuzz_data_loader.FuzzerProfile], basefolder: str, coverage_url: str, conclusions) -> str: """ Creates the HTML of the calltree. Returns the HTML as a string. """ logger.info("Not implemented") return "" def create_calltree(self, profile: fuzz_data_loader.FuzzerProfile) -> str: logger.info("In calltree") # Generate HTML for the calltree calltree_html_string = "<div class='section-wrapper'>" calltree_html_string += "<h1>Fuzzer calltree</h1>" nodes = fuzz_cfg_load.extract_all_callsites(profile.function_call_depths) for i in range(len(nodes)): node = nodes[i] demangled_name = fuzz_utils.demangle_cpp_func(node.dst_function_name) # We may not want to show certain functions at times, e.g. libc functions # in case it bloats the calltree # libc_funcs = { "free" } libc_funcs: Set[str] = set() avoid = len([fn for fn in libc_funcs if fn in demangled_name]) > 0 if avoid: continue # Prepare strings needed in the HTML color_to_be = node.cov_color callsite_link = node.cov_callsite_link link = node.cov_link ct_idx_str = self.create_str_node_ctx_idx(str(node.cov_ct_idx)) # Only display [function] link if we have, otherwhise show no [function] text. if node.dst_function_source_file.replace(" ", "") != "/": func_href = f"""<a href="{link}">[function]</a>""" else: func_href = "" if i > 0: previous_node = nodes[i - 1] if previous_node.depth == node.depth: calltree_html_string += "</div>" depth_diff = previous_node.depth - node.depth if depth_diff >= 1: closing_divs = "</div>" # To close "calltree-line-wrapper" closing_divs = "</div>" * (int(depth_diff) + 1) calltree_html_string += closing_divs calltree_html_string += f""" <div class="{color_to_be}-background coverage-line"> <span class="coverage-line-inner" data-calltree-idx="{ct_idx_str}"> {node.depth} <code class="language-clike"> {demangled_name} </code> <span class="coverage-line-filename"> {func_href} <a href="{callsite_link}"> [call site2] </a> <span class="calltree-idx">[calltree idx: {ct_idx_str}]</span> </span> </span> """ if i != len(nodes) - 1: next_node = nodes[i + 1] if next_node.depth > node.depth: calltree_html_string += f"""<div class="calltree-line-wrapper open level-{int(node.depth)}" style="padding-left: 16px">""" elif next_node.depth < node.depth: depth_diff = int(node.depth - next_node.depth) calltree_html_string += "</div>" * depth_diff calltree_html_string += "</div>" logger.info("Calltree created") # Write the HTML to a file called calltree_view_XX.html where XX is a counter. calltree_file_idx = 0 calltree_html_file = f"calltree_view_{calltree_file_idx}.html" while os.path.isfile(calltree_html_file): calltree_file_idx += 1 calltree_html_file = f"calltree_view_{calltree_file_idx}.html" self.html_create_dedicated_calltree_file( calltree_html_string, calltree_html_file, profile, ) return calltree_html_file def html_create_dedicated_calltree_file( self, calltree_html_string, filename, profile: fuzz_data_loader.FuzzerProfile): """ Write a wrapped HTML file with the tags needed from fuzz-introspector We use this only for wrapping calltrees at the moment, however, down the line it makes sense to have an easy wrapper for other HTML pages too. """ complete_html_string = "" # HTML start html_header = fuzz_html_helpers.
[ "html_create_table_head", "html_table_add_row", "html_get_header", "html_get_navbar", "List", "html_add_header_with_link", "html_get_table_of_contents", "Any", "Tuple" ]
ode> <span class="coverage-line-filename"> {func_href} <a href="{callsite_link}"> [call site2] </a> <span class="calltree-idx">[calltree idx: {ct_idx_str}]</span> </span> </span> """ if i != len(nodes) - 1: next_node = nodes[i + 1] if next_node.depth > node.depth: calltree_html_string += f"""<div class="calltree-line-wrapper open level-{int(node.depth)}" style="padding-left: 16px">""" elif next_node.depth < node.depth: depth_diff = int(node.depth - next_node.depth) calltree_html_string += "</div>" * depth_diff calltree_html_string += "</div>" logger.info("Calltree created") # Write the HTML to a file called calltree_view_XX.html where XX is a counter. calltree_file_idx = 0 calltree_html_file = f"calltree_view_{calltree_file_idx}.html" while os.path.isfile(calltree_html_file): calltree_file_idx += 1 calltree_html_file = f"calltree_view_{calltree_file_idx}.html" self.html_create_dedicated_calltree_file( calltree_html_string, calltree_html_file, profile, ) return calltree_html_file def html_create_dedicated_calltree_file( self, calltree_html_string, filename, profile: fuzz_data_loader.FuzzerProfile): """ Write a wrapped HTML file with the tags needed from fuzz-introspector We use this only for wrapping calltrees at the moment, however, down the line it makes sense to have an easy wrapper for other HTML pages too. """ complete_html_string = "" # HTML start html_header = fuzz_html_helpers.
20
32
0
6,201
ossf__fuzz-introspector
4867924b714a7789f94fbcde53713a29ceab7272
post-processing/analyses/fuzz_calltree_analysis.py
infile
create_fuzz_blocker_table
true
function
7
7
false
true
[ "get_fuzz_blockers", "name", "create_fuzz_blocker_table", "create_str_node_ctx_idx", "html_create_dedicated_calltree_file", "__init__", "analysis_func", "create_calltree", "__annotations__", "__class__", "__delattr__", "__dict__", "__dir__", "__eq__", "__format__", "__getattribute__", "__hash__", "__init_subclass__", "__ne__", "__new__", "__reduce__", "__reduce_ex__", "__repr__", "__setattr__", "__sizeof__", "__slots__", "__str__", "__subclasshook__", "__doc__", "__module__" ]
[ { "name": "analysis_func", "type": "function" }, { "name": "create_calltree", "type": "function" }, { "name": "create_fuzz_blocker_table", "type": "function" }, { "name": "create_str_node_ctx_idx", "type": "function" }, { "name": "get_fuzz_blockers", "type": "function" }, { "name": "html_create_dedicated_calltree_file", "type": "function" }, { "name": "name", "type": "statement" }, { "name": "__annotations__", "type": "statement" }, { "name": "__class__", "type": "property" }, { "name": "__delattr__", "type": "function" }, { "name": "__dict__", "type": "statement" }, { "name": "__dir__", "type": "function" }, { "name": "__doc__", "type": "statement" }, { "name": "__eq__", "type": "function" }, { "name": "__format__", "type": "function" }, { "name": "__getattribute__", "type": "function" }, { "name": "__hash__", "type": "function" }, { "name": "__init__", "type": "function" }, { "name": "__init_subclass__", "type": "function" }, { "name": "__module__", "type": "statement" }, { "name": "__ne__", "type": "function" }, { "name": "__new__", "type": "function" }, { "name": "__reduce__", "type": "function" }, { "name": "__reduce_ex__", "type": "function" }, { "name": "__repr__", "type": "function" }, { "name": "__setattr__", "type": "function" }, { "name": "__sizeof__", "type": "function" }, { "name": "__slots__", "type": "statement" }, { "name": "__str__", "type": "function" } ]
# Copyright 2022 Fuzz Introspector Authors # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. """Logic related to calltree analysis""" import os import logging import json from typing import ( List, Tuple, Optional, Set, ) import fuzz_analysis import fuzz_data_loader import fuzz_utils import fuzz_cfg_load import fuzz_html_helpers # For pretty printing the html code: from bs4 import BeautifulSoup as bs logger = logging.getLogger(name=__name__) class FuzzCalltreeAnalysis(fuzz_analysis.AnalysisInterface): def __init__(self): self.name = "FuzzCalltreeAnalysis" logger.info("Creating FuzzCalltreeAnalysis") def analysis_func(self, toc_list: List[Tuple[str, str, int]], tables: List[str], project_profile: fuzz_data_loader.MergedProjectProfile, profiles: List[fuzz_data_loader.FuzzerProfile], basefolder: str, coverage_url: str, conclusions) -> str: """ Creates the HTML of the calltree. Returns the HTML as a string. """ logger.info("Not implemented") return "" def create_calltree(self, profile: fuzz_data_loader.FuzzerProfile) -> str: logger.info("In calltree") # Generate HTML for the calltree calltree_html_string = "<div class='section-wrapper'>" calltree_html_string += "<h1>Fuzzer calltree</h1>" nodes = fuzz_cfg_load.extract_all_callsites(profile.function_call_depths) for i in range(len(nodes)): node = nodes[i] demangled_name = fuzz_utils.demangle_cpp_func(node.dst_function_name) # We may not want to show certain functions at times, e.g. libc functions # in case it bloats the calltree # libc_funcs = { "free" } libc_funcs: Set[str] = set() avoid = len([fn for fn in libc_funcs if fn in demangled_name]) > 0 if avoid: continue # Prepare strings needed in the HTML color_to_be = node.cov_color callsite_link = node.cov_callsite_link link = node.cov_link ct_idx_str = self.create_str_node_ctx_idx(str(node.cov_ct_idx)) # Only display [function] link if we have, otherwhise show no [function] text. if node.dst_function_source_file.replace(" ", "") != "/": func_href = f"""<a href="{link}">[function]</a>""" else: func_href = "" if i > 0: previous_node = nodes[i - 1] if previous_node.depth == node.depth: calltree_html_string += "</div>" depth_diff = previous_node.depth - node.depth if depth_diff >= 1: closing_divs = "</div>" # To close "calltree-line-wrapper" closing_divs = "</div>" * (int(depth_diff) + 1) calltree_html_string += closing_divs calltree_html_string += f""" <div class="{color_to_be}-background coverage-line"> <span class="coverage-line-inner" data-calltree-idx="{ct_idx_str}"> {node.depth} <code class="language-clike"> {demangled_name} </code> <span class="coverage-line-filename"> {func_href} <a href="{callsite_link}"> [call site2] </a> <span class="calltree-idx">[calltree idx: {ct_idx_str}]</span> </span> </span> """ if i != len(nodes) - 1: next_node = nodes[i + 1] if next_node.depth > node.depth: calltree_html_string += f"""<div class="calltree-line-wrapper open level-{int(node.depth)}" style="padding-left: 16px">""" elif next_node.depth < node.depth: depth_diff = int(node.depth - next_node.depth) calltree_html_string += "</div>" * depth_diff calltree_html_string += "</div>" logger.info("Calltree created") # Write the HTML to a file called calltree_view_XX.html where XX is a counter. calltree_file_idx = 0 calltree_html_file = f"calltree_view_{calltree_file_idx}.html" while os.path.isfile(calltree_html_file): calltree_file_idx += 1 calltree_html_file = f"calltree_view_{calltree_file_idx}.html" self.html_create_dedicated_calltree_file( calltree_html_string, calltree_html_file, profile, ) return calltree_html_file def html_create_dedicated_calltree_file( self, calltree_html_string, filename, profile: fuzz_data_loader.FuzzerProfile): """ Write a wrapped HTML file with the tags needed from fuzz-introspector We use this only for wrapping calltrees at the moment, however, down the line it makes sense to have an easy wrapper for other HTML pages too. """ complete_html_string = "" # HTML start html_header = fuzz_html_helpers.html_get_header( calltree=True, title=f"Fuzz introspector: { profile.get_key() }" ) html_header += '<div class="content-section calltree-content-section">' complete_html_string += html_header # Display fuzz blocker at top of page fuzz_blockers = self.get_fuzz_blockers( profile, max_blockers_to_extract=12 ) fuzz_blocker_table = self.
[ "get_fuzz_blockers", "name", "create_fuzz_blocker_table", "create_str_node_ctx_idx", "html_create_dedicated_calltree_file", "analysis_func", "create_calltree" ]
calltree_html_string += f"""<div class="calltree-line-wrapper open level-{int(node.depth)}" style="padding-left: 16px">""" elif next_node.depth < node.depth: depth_diff = int(node.depth - next_node.depth) calltree_html_string += "</div>" * depth_diff calltree_html_string += "</div>" logger.info("Calltree created") # Write the HTML to a file called calltree_view_XX.html where XX is a counter. calltree_file_idx = 0 calltree_html_file = f"calltree_view_{calltree_file_idx}.html" while os.path.isfile(calltree_html_file): calltree_file_idx += 1 calltree_html_file = f"calltree_view_{calltree_file_idx}.html" self.html_create_dedicated_calltree_file( calltree_html_string, calltree_html_file, profile, ) return calltree_html_file def html_create_dedicated_calltree_file( self, calltree_html_string, filename, profile: fuzz_data_loader.FuzzerProfile): """ Write a wrapped HTML file with the tags needed from fuzz-introspector We use this only for wrapping calltrees at the moment, however, down the line it makes sense to have an easy wrapper for other HTML pages too. """ complete_html_string = "" # HTML start html_header = fuzz_html_helpers.html_get_header( calltree=True, title=f"Fuzz introspector: { profile.get_key() }" ) html_header += '<div class="content-section calltree-content-section">' complete_html_string += html_header # Display fuzz blocker at top of page fuzz_blockers = self.get_fuzz_blockers( profile, max_blockers_to_extract=12 ) fuzz_blocker_table = self.
22
33
0
6,814
ossf__fuzz-introspector
4867924b714a7789f94fbcde53713a29ceab7272
post-processing/analyses/fuzz_calltree_analysis.py
infile
create_str_node_ctx_idx
true
function
7
7
false
false
[ "get_fuzz_blockers", "name", "create_fuzz_blocker_table", "create_str_node_ctx_idx", "create_calltree", "__init__", "analysis_func", "html_create_dedicated_calltree_file", "__annotations__", "__class__", "__delattr__", "__dict__", "__dir__", "__eq__", "__format__", "__getattribute__", "__hash__", "__init_subclass__", "__ne__", "__new__", "__reduce__", "__reduce_ex__", "__repr__", "__setattr__", "__sizeof__", "__slots__", "__str__", "__subclasshook__", "__doc__", "__module__" ]
[ { "name": "analysis_func", "type": "function" }, { "name": "create_calltree", "type": "function" }, { "name": "create_fuzz_blocker_table", "type": "function" }, { "name": "create_str_node_ctx_idx", "type": "function" }, { "name": "get_fuzz_blockers", "type": "function" }, { "name": "html_create_dedicated_calltree_file", "type": "function" }, { "name": "name", "type": "statement" }, { "name": "__annotations__", "type": "statement" }, { "name": "__class__", "type": "property" }, { "name": "__delattr__", "type": "function" }, { "name": "__dict__", "type": "statement" }, { "name": "__dir__", "type": "function" }, { "name": "__doc__", "type": "statement" }, { "name": "__eq__", "type": "function" }, { "name": "__format__", "type": "function" }, { "name": "__getattribute__", "type": "function" }, { "name": "__hash__", "type": "function" }, { "name": "__init__", "type": "function" }, { "name": "__init_subclass__", "type": "function" }, { "name": "__module__", "type": "statement" }, { "name": "__ne__", "type": "function" }, { "name": "__new__", "type": "function" }, { "name": "__reduce__", "type": "function" }, { "name": "__reduce_ex__", "type": "function" }, { "name": "__repr__", "type": "function" }, { "name": "__setattr__", "type": "function" }, { "name": "__sizeof__", "type": "function" }, { "name": "__slots__", "type": "statement" }, { "name": "__str__", "type": "function" } ]
# Copyright 2022 Fuzz Introspector Authors # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. """Logic related to calltree analysis""" import os import logging import json from typing import ( List, Tuple, Optional, Set, ) import fuzz_analysis import fuzz_data_loader import fuzz_utils import fuzz_cfg_load import fuzz_html_helpers # For pretty printing the html code: from bs4 import BeautifulSoup as bs logger = logging.getLogger(name=__name__) class FuzzCalltreeAnalysis(fuzz_analysis.AnalysisInterface): def __init__(self): self.name = "FuzzCalltreeAnalysis" logger.info("Creating FuzzCalltreeAnalysis") def analysis_func(self, toc_list: List[Tuple[str, str, int]], tables: List[str], project_profile: fuzz_data_loader.MergedProjectProfile, profiles: List[fuzz_data_loader.FuzzerProfile], basefolder: str, coverage_url: str, conclusions) -> str: """ Creates the HTML of the calltree. Returns the HTML as a string. """ logger.info("Not implemented") return "" def create_calltree(self, profile: fuzz_data_loader.FuzzerProfile) -> str: logger.info("In calltree") # Generate HTML for the calltree calltree_html_string = "<div class='section-wrapper'>" calltree_html_string += "<h1>Fuzzer calltree</h1>" nodes = fuzz_cfg_load.extract_all_callsites(profile.function_call_depths) for i in range(len(nodes)): node = nodes[i] demangled_name = fuzz_utils.demangle_cpp_func(node.dst_function_name) # We may not want to show certain functions at times, e.g. libc functions # in case it bloats the calltree # libc_funcs = { "free" } libc_funcs: Set[str] = set() avoid = len([fn for fn in libc_funcs if fn in demangled_name]) > 0 if avoid: continue # Prepare strings needed in the HTML color_to_be = node.cov_color callsite_link = node.cov_callsite_link link = node.cov_link ct_idx_str = self.create_str_node_ctx_idx(str(node.cov_ct_idx)) # Only display [function] link if we have, otherwhise show no [function] text. if node.dst_function_source_file.replace(" ", "") != "/": func_href = f"""<a href="{link}">[function]</a>""" else: func_href = "" if i > 0: previous_node = nodes[i - 1] if previous_node.depth == node.depth: calltree_html_string += "</div>" depth_diff = previous_node.depth - node.depth if depth_diff >= 1: closing_divs = "</div>" # To close "calltree-line-wrapper" closing_divs = "</div>" * (int(depth_diff) + 1) calltree_html_string += closing_divs calltree_html_string += f""" <div class="{color_to_be}-background coverage-line"> <span class="coverage-line-inner" data-calltree-idx="{ct_idx_str}"> {node.depth} <code class="language-clike"> {demangled_name} </code> <span class="coverage-line-filename"> {func_href} <a href="{callsite_link}"> [call site2] </a> <span class="calltree-idx">[calltree idx: {ct_idx_str}]</span> </span> </span> """ if i != len(nodes) - 1: next_node = nodes[i + 1] if next_node.depth > node.depth: calltree_html_string += f"""<div class="calltree-line-wrapper open level-{int(node.depth)}" style="padding-left: 16px">""" elif next_node.depth < node.depth: depth_diff = int(node.depth - next_node.depth) calltree_html_string += "</div>" * depth_diff calltree_html_string += "</div>" logger.info("Calltree created") # Write the HTML to a file called calltree_view_XX.html where XX is a counter. calltree_file_idx = 0 calltree_html_file = f"calltree_view_{calltree_file_idx}.html" while os.path.isfile(calltree_html_file): calltree_file_idx += 1 calltree_html_file = f"calltree_view_{calltree_file_idx}.html" self.html_create_dedicated_calltree_file( calltree_html_string, calltree_html_file, profile, ) return calltree_html_file def html_create_dedicated_calltree_file( self, calltree_html_string, filename, profile: fuzz_data_loader.FuzzerProfile): """ Write a wrapped HTML file with the tags needed from fuzz-introspector We use this only for wrapping calltrees at the moment, however, down the line it makes sense to have an easy wrapper for other HTML pages too. """ complete_html_string = "" # HTML start html_header = fuzz_html_helpers.html_get_header( calltree=True, title=f"Fuzz introspector: { profile.get_key() }" ) html_header += '<div class="content-section calltree-content-section">' complete_html_string += html_header # Display fuzz blocker at top of page fuzz_blockers = self.get_fuzz_blockers( profile, max_blockers_to_extract=12 ) fuzz_blocker_table = self.create_fuzz_blocker_table(profile, [], "", fuzz_blockers) if fuzz_blocker_table is not None: complete_html_string += "<div class=\"report-box\">" complete_html_string += "<h1>Fuzz blockers</h1>" complete_html_string += fuzz_blocker_table complete_html_string += "</div>" # Display calltree complete_html_string += calltree_html_string complete_html_string += "</div></div></div></div>" # HTML end html_end = '</div>' blocker_idxs = [] for node in fuzz_blockers: blocker_idxs.append(self.
[ "get_fuzz_blockers", "name", "create_fuzz_blocker_table", "create_str_node_ctx_idx", "create_calltree", "analysis_func", "html_create_dedicated_calltree_file" ]
while os.path.isfile(calltree_html_file): calltree_file_idx += 1 calltree_html_file = f"calltree_view_{calltree_file_idx}.html" self.html_create_dedicated_calltree_file( calltree_html_string, calltree_html_file, profile, ) return calltree_html_file def html_create_dedicated_calltree_file( self, calltree_html_string, filename, profile: fuzz_data_loader.FuzzerProfile): """ Write a wrapped HTML file with the tags needed from fuzz-introspector We use this only for wrapping calltrees at the moment, however, down the line it makes sense to have an easy wrapper for other HTML pages too. """ complete_html_string = "" # HTML start html_header = fuzz_html_helpers.html_get_header( calltree=True, title=f"Fuzz introspector: { profile.get_key() }" ) html_header += '<div class="content-section calltree-content-section">' complete_html_string += html_header # Display fuzz blocker at top of page fuzz_blockers = self.get_fuzz_blockers( profile, max_blockers_to_extract=12 ) fuzz_blocker_table = self.create_fuzz_blocker_table(profile, [], "", fuzz_blockers) if fuzz_blocker_table is not None: complete_html_string += "<div class=\"report-box\">" complete_html_string += "<h1>Fuzz blockers</h1>" complete_html_string += fuzz_blocker_table complete_html_string += "</div>" # Display calltree complete_html_string += calltree_html_string complete_html_string += "</div></div></div></div>" # HTML end html_end = '</div>' blocker_idxs = [] for node in fuzz_blockers: blocker_idxs.append(self.
23
34
0
6,847
ossf__fuzz-introspector
4867924b714a7789f94fbcde53713a29ceab7272
post-processing/analyses/fuzz_calltree_analysis.py
infile
cov_ct_idx
true
statement
17
17
false
false
[ "cov_ct_idx", "depth", "cov_forward_reds", "dst_function_name", "dst_function_source_file", "children", "cov_callsite_link", "cov_color", "cov_hitcount", "cov_largest_blocked_func", "cov_link", "cov_parent", "hitcount", "parent_calltree_callsite", "src_function_name", "src_function_source_file", "src_linenumber", "__init__", "__annotations__", "__class__", "__delattr__", "__dict__", "__dir__", "__eq__", "__format__", "__getattribute__", "__hash__", "__init_subclass__", "__ne__", "__new__", "__reduce__", "__reduce_ex__", "__repr__", "__setattr__", "__sizeof__", "__str__", "__subclasshook__", "__doc__", "__module__" ]
[ { "name": "children", "type": "statement" }, { "name": "cov_callsite_link", "type": "statement" }, { "name": "cov_color", "type": "statement" }, { "name": "cov_ct_idx", "type": "statement" }, { "name": "cov_forward_reds", "type": "statement" }, { "name": "cov_hitcount", "type": "statement" }, { "name": "cov_largest_blocked_func", "type": "statement" }, { "name": "cov_link", "type": "statement" }, { "name": "cov_parent", "type": "statement" }, { "name": "depth", "type": "statement" }, { "name": "dst_function_name", "type": "statement" }, { "name": "dst_function_source_file", "type": "statement" }, { "name": "hitcount", "type": "statement" }, { "name": "parent_calltree_callsite", "type": "statement" }, { "name": "src_function_name", "type": "statement" }, { "name": "src_function_source_file", "type": "statement" }, { "name": "src_linenumber", "type": "statement" }, { "name": "__annotations__", "type": "statement" }, { "name": "__class__", "type": "property" }, { "name": "__delattr__", "type": "function" }, { "name": "__dict__", "type": "statement" }, { "name": "__dir__", "type": "function" }, { "name": "__doc__", "type": "statement" }, { "name": "__eq__", "type": "function" }, { "name": "__format__", "type": "function" }, { "name": "__getattribute__", "type": "function" }, { "name": "__hash__", "type": "function" }, { "name": "__init__", "type": "function" }, { "name": "__init_subclass__", "type": "function" }, { "name": "__module__", "type": "statement" }, { "name": "__ne__", "type": "function" }, { "name": "__new__", "type": "function" }, { "name": "__reduce__", "type": "function" }, { "name": "__reduce_ex__", "type": "function" }, { "name": "__repr__", "type": "function" }, { "name": "__setattr__", "type": "function" }, { "name": "__sizeof__", "type": "function" }, { "name": "__slots__", "type": "statement" }, { "name": "__str__", "type": "function" } ]
# Copyright 2022 Fuzz Introspector Authors # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. """Logic related to calltree analysis""" import os import logging import json from typing import ( List, Tuple, Optional, Set, ) import fuzz_analysis import fuzz_data_loader import fuzz_utils import fuzz_cfg_load import fuzz_html_helpers # For pretty printing the html code: from bs4 import BeautifulSoup as bs logger = logging.getLogger(name=__name__) class FuzzCalltreeAnalysis(fuzz_analysis.AnalysisInterface): def __init__(self): self.name = "FuzzCalltreeAnalysis" logger.info("Creating FuzzCalltreeAnalysis") def analysis_func(self, toc_list: List[Tuple[str, str, int]], tables: List[str], project_profile: fuzz_data_loader.MergedProjectProfile, profiles: List[fuzz_data_loader.FuzzerProfile], basefolder: str, coverage_url: str, conclusions) -> str: """ Creates the HTML of the calltree. Returns the HTML as a string. """ logger.info("Not implemented") return "" def create_calltree(self, profile: fuzz_data_loader.FuzzerProfile) -> str: logger.info("In calltree") # Generate HTML for the calltree calltree_html_string = "<div class='section-wrapper'>" calltree_html_string += "<h1>Fuzzer calltree</h1>" nodes = fuzz_cfg_load.extract_all_callsites(profile.function_call_depths) for i in range(len(nodes)): node = nodes[i] demangled_name = fuzz_utils.demangle_cpp_func(node.dst_function_name) # We may not want to show certain functions at times, e.g. libc functions # in case it bloats the calltree # libc_funcs = { "free" } libc_funcs: Set[str] = set() avoid = len([fn for fn in libc_funcs if fn in demangled_name]) > 0 if avoid: continue # Prepare strings needed in the HTML color_to_be = node.cov_color callsite_link = node.cov_callsite_link link = node.cov_link ct_idx_str = self.create_str_node_ctx_idx(str(node.cov_ct_idx)) # Only display [function] link if we have, otherwhise show no [function] text. if node.dst_function_source_file.replace(" ", "") != "/": func_href = f"""<a href="{link}">[function]</a>""" else: func_href = "" if i > 0: previous_node = nodes[i - 1] if previous_node.depth == node.depth: calltree_html_string += "</div>" depth_diff = previous_node.depth - node.depth if depth_diff >= 1: closing_divs = "</div>" # To close "calltree-line-wrapper" closing_divs = "</div>" * (int(depth_diff) + 1) calltree_html_string += closing_divs calltree_html_string += f""" <div class="{color_to_be}-background coverage-line"> <span class="coverage-line-inner" data-calltree-idx="{ct_idx_str}"> {node.depth} <code class="language-clike"> {demangled_name} </code> <span class="coverage-line-filename"> {func_href} <a href="{callsite_link}"> [call site2] </a> <span class="calltree-idx">[calltree idx: {ct_idx_str}]</span> </span> </span> """ if i != len(nodes) - 1: next_node = nodes[i + 1] if next_node.depth > node.depth: calltree_html_string += f"""<div class="calltree-line-wrapper open level-{int(node.depth)}" style="padding-left: 16px">""" elif next_node.depth < node.depth: depth_diff = int(node.depth - next_node.depth) calltree_html_string += "</div>" * depth_diff calltree_html_string += "</div>" logger.info("Calltree created") # Write the HTML to a file called calltree_view_XX.html where XX is a counter. calltree_file_idx = 0 calltree_html_file = f"calltree_view_{calltree_file_idx}.html" while os.path.isfile(calltree_html_file): calltree_file_idx += 1 calltree_html_file = f"calltree_view_{calltree_file_idx}.html" self.html_create_dedicated_calltree_file( calltree_html_string, calltree_html_file, profile, ) return calltree_html_file def html_create_dedicated_calltree_file( self, calltree_html_string, filename, profile: fuzz_data_loader.FuzzerProfile): """ Write a wrapped HTML file with the tags needed from fuzz-introspector We use this only for wrapping calltrees at the moment, however, down the line it makes sense to have an easy wrapper for other HTML pages too. """ complete_html_string = "" # HTML start html_header = fuzz_html_helpers.html_get_header( calltree=True, title=f"Fuzz introspector: { profile.get_key() }" ) html_header += '<div class="content-section calltree-content-section">' complete_html_string += html_header # Display fuzz blocker at top of page fuzz_blockers = self.get_fuzz_blockers( profile, max_blockers_to_extract=12 ) fuzz_blocker_table = self.create_fuzz_blocker_table(profile, [], "", fuzz_blockers) if fuzz_blocker_table is not None: complete_html_string += "<div class=\"report-box\">" complete_html_string += "<h1>Fuzz blockers</h1>" complete_html_string += fuzz_blocker_table complete_html_string += "</div>" # Display calltree complete_html_string += calltree_html_string complete_html_string += "</div></div></div></div>" # HTML end html_end = '</div>' blocker_idxs = [] for node in fuzz_blockers: blocker_idxs.append(self.create_str_node_ctx_idx(str(node.
[ "cov_ct_idx", "depth", "cov_forward_reds", "dst_function_name", "dst_function_source_file", "children", "cov_callsite_link", "cov_color", "cov_hitcount", "cov_largest_blocked_func", "cov_link", "cov_parent", "hitcount", "parent_calltree_callsite", "src_function_name", "src_function_source_file", "src_linenumber" ]
tml_file): calltree_file_idx += 1 calltree_html_file = f"calltree_view_{calltree_file_idx}.html" self.html_create_dedicated_calltree_file( calltree_html_string, calltree_html_file, profile, ) return calltree_html_file def html_create_dedicated_calltree_file( self, calltree_html_string, filename, profile: fuzz_data_loader.FuzzerProfile): """ Write a wrapped HTML file with the tags needed from fuzz-introspector We use this only for wrapping calltrees at the moment, however, down the line it makes sense to have an easy wrapper for other HTML pages too. """ complete_html_string = "" # HTML start html_header = fuzz_html_helpers.html_get_header( calltree=True, title=f"Fuzz introspector: { profile.get_key() }" ) html_header += '<div class="content-section calltree-content-section">' complete_html_string += html_header # Display fuzz blocker at top of page fuzz_blockers = self.get_fuzz_blockers( profile, max_blockers_to_extract=12 ) fuzz_blocker_table = self.create_fuzz_blocker_table(profile, [], "", fuzz_blockers) if fuzz_blocker_table is not None: complete_html_string += "<div class=\"report-box\">" complete_html_string += "<h1>Fuzz blockers</h1>" complete_html_string += fuzz_blocker_table complete_html_string += "</div>" # Display calltree complete_html_string += calltree_html_string complete_html_string += "</div></div></div></div>" # HTML end html_end = '</div>' blocker_idxs = [] for node in fuzz_blockers: blocker_idxs.append(self.create_str_node_ctx_idx(str(node.
24
35
0
7,754
ossf__fuzz-introspector
4867924b714a7789f94fbcde53713a29ceab7272
post-processing/analyses/fuzz_calltree_analysis.py
inproject
FuzzerProfile
true
class
14
19
false
false
[ "FuzzerProfile", "MergedProjectProfile", "List", "None", "logger", "add_func_to_reached_and_clone", "FunctionProfile", "load_all_profiles", "read_fuzzer_data_file_to_profile", "Any", "Dict", "Optional", "Set", "Tuple" ]
[ { "name": "add_func_to_reached_and_clone", "type": "function" }, { "name": "Any", "type": "class" }, { "name": "copy", "type": "module" }, { "name": "Dict", "type": "class" }, { "name": "FunctionProfile", "type": "class" }, { "name": "fuzz_cfg_load", "type": "module" }, { "name": "fuzz_cov_load", "type": "module" }, { "name": "fuzz_utils", "type": "module" }, { "name": "FuzzerProfile", "type": "class" }, { "name": "List", "type": "class" }, { "name": "load_all_profiles", "type": "function" }, { "name": "logger", "type": "statement" }, { "name": "logging", "type": "module" }, { "name": "MergedProjectProfile", "type": "class" }, { "name": "Optional", "type": "class" }, { "name": "os", "type": "module" }, { "name": "read_fuzzer_data_file_to_profile", "type": "function" }, { "name": "Set", "type": "class" }, { "name": "Tuple", "type": "class" }, { "name": "__doc__", "type": "instance" }, { "name": "__file__", "type": "instance" }, { "name": "__name__", "type": "instance" }, { "name": "__package__", "type": "instance" } ]
# Copyright 2022 Fuzz Introspector Authors # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. """Logic related to calltree analysis""" import os import logging import json from typing import ( List, Tuple, Optional, Set, ) import fuzz_analysis import fuzz_data_loader import fuzz_utils import fuzz_cfg_load import fuzz_html_helpers # For pretty printing the html code: from bs4 import BeautifulSoup as bs logger = logging.getLogger(name=__name__) class FuzzCalltreeAnalysis(fuzz_analysis.AnalysisInterface): def __init__(self): self.name = "FuzzCalltreeAnalysis" logger.info("Creating FuzzCalltreeAnalysis") def analysis_func(self, toc_list: List[Tuple[str, str, int]], tables: List[str], project_profile: fuzz_data_loader.MergedProjectProfile, profiles: List[fuzz_data_loader.FuzzerProfile], basefolder: str, coverage_url: str, conclusions) -> str: """ Creates the HTML of the calltree. Returns the HTML as a string. """ logger.info("Not implemented") return "" def create_calltree(self, profile: fuzz_data_loader.FuzzerProfile) -> str: logger.info("In calltree") # Generate HTML for the calltree calltree_html_string = "<div class='section-wrapper'>" calltree_html_string += "<h1>Fuzzer calltree</h1>" nodes = fuzz_cfg_load.extract_all_callsites(profile.function_call_depths) for i in range(len(nodes)): node = nodes[i] demangled_name = fuzz_utils.demangle_cpp_func(node.dst_function_name) # We may not want to show certain functions at times, e.g. libc functions # in case it bloats the calltree # libc_funcs = { "free" } libc_funcs: Set[str] = set() avoid = len([fn for fn in libc_funcs if fn in demangled_name]) > 0 if avoid: continue # Prepare strings needed in the HTML color_to_be = node.cov_color callsite_link = node.cov_callsite_link link = node.cov_link ct_idx_str = self.create_str_node_ctx_idx(str(node.cov_ct_idx)) # Only display [function] link if we have, otherwhise show no [function] text. if node.dst_function_source_file.replace(" ", "") != "/": func_href = f"""<a href="{link}">[function]</a>""" else: func_href = "" if i > 0: previous_node = nodes[i - 1] if previous_node.depth == node.depth: calltree_html_string += "</div>" depth_diff = previous_node.depth - node.depth if depth_diff >= 1: closing_divs = "</div>" # To close "calltree-line-wrapper" closing_divs = "</div>" * (int(depth_diff) + 1) calltree_html_string += closing_divs calltree_html_string += f""" <div class="{color_to_be}-background coverage-line"> <span class="coverage-line-inner" data-calltree-idx="{ct_idx_str}"> {node.depth} <code class="language-clike"> {demangled_name} </code> <span class="coverage-line-filename"> {func_href} <a href="{callsite_link}"> [call site2] </a> <span class="calltree-idx">[calltree idx: {ct_idx_str}]</span> </span> </span> """ if i != len(nodes) - 1: next_node = nodes[i + 1] if next_node.depth > node.depth: calltree_html_string += f"""<div class="calltree-line-wrapper open level-{int(node.depth)}" style="padding-left: 16px">""" elif next_node.depth < node.depth: depth_diff = int(node.depth - next_node.depth) calltree_html_string += "</div>" * depth_diff calltree_html_string += "</div>" logger.info("Calltree created") # Write the HTML to a file called calltree_view_XX.html where XX is a counter. calltree_file_idx = 0 calltree_html_file = f"calltree_view_{calltree_file_idx}.html" while os.path.isfile(calltree_html_file): calltree_file_idx += 1 calltree_html_file = f"calltree_view_{calltree_file_idx}.html" self.html_create_dedicated_calltree_file( calltree_html_string, calltree_html_file, profile, ) return calltree_html_file def html_create_dedicated_calltree_file( self, calltree_html_string, filename, profile: fuzz_data_loader.FuzzerProfile): """ Write a wrapped HTML file with the tags needed from fuzz-introspector We use this only for wrapping calltrees at the moment, however, down the line it makes sense to have an easy wrapper for other HTML pages too. """ complete_html_string = "" # HTML start html_header = fuzz_html_helpers.html_get_header( calltree=True, title=f"Fuzz introspector: { profile.get_key() }" ) html_header += '<div class="content-section calltree-content-section">' complete_html_string += html_header # Display fuzz blocker at top of page fuzz_blockers = self.get_fuzz_blockers( profile, max_blockers_to_extract=12 ) fuzz_blocker_table = self.create_fuzz_blocker_table(profile, [], "", fuzz_blockers) if fuzz_blocker_table is not None: complete_html_string += "<div class=\"report-box\">" complete_html_string += "<h1>Fuzz blockers</h1>" complete_html_string += fuzz_blocker_table complete_html_string += "</div>" # Display calltree complete_html_string += calltree_html_string complete_html_string += "</div></div></div></div>" # HTML end html_end = '</div>' blocker_idxs = [] for node in fuzz_blockers: blocker_idxs.append(self.create_str_node_ctx_idx(str(node.cov_ct_idx))) if len(blocker_idxs) > 0: html_end = "<script>" html_end += f"var fuzz_blocker_idxs = {json.dumps(blocker_idxs)};" html_end += "</script>" html_end += "<script src=\"prism.js\"></script>" html_end += "<script src=\"clike.js\"></script>" html_end += "<script src=\"calltree.js\"></script>" complete_html_string += html_end complete_html_string += "</body></html>" # Beautify and write HTML soup = bs(complete_html_string, 'lxml') pretty_html = soup.prettify() with open(filename, "w+") as cf: cf.write(pretty_html) def create_str_node_ctx_idx(self, cov_ct_idx): prefixed_zeros = "0" * (len("00000") - len(cov_ct_idx)) return f"{prefixed_zeros}{cov_ct_idx}" def get_fuzz_blockers( self, profile: fuzz_data_loader.
[ "FuzzerProfile", "MergedProjectProfile", "List", "None", "logger", "add_func_to_reached_and_clone", "FunctionProfile", "load_all_profiles", "read_fuzzer_data_file_to_profile", "Any", "Dict", "Optional", "Set", "Tuple" ]
ospector: { profile.get_key() }" ) html_header += '<div class="content-section calltree-content-section">' complete_html_string += html_header # Display fuzz blocker at top of page fuzz_blockers = self.get_fuzz_blockers( profile, max_blockers_to_extract=12 ) fuzz_blocker_table = self.create_fuzz_blocker_table(profile, [], "", fuzz_blockers) if fuzz_blocker_table is not None: complete_html_string += "<div class=\"report-box\">" complete_html_string += "<h1>Fuzz blockers</h1>" complete_html_string += fuzz_blocker_table complete_html_string += "</div>" # Display calltree complete_html_string += calltree_html_string complete_html_string += "</div></div></div></div>" # HTML end html_end = '</div>' blocker_idxs = [] for node in fuzz_blockers: blocker_idxs.append(self.create_str_node_ctx_idx(str(node.cov_ct_idx))) if len(blocker_idxs) > 0: html_end = "<script>" html_end += f"var fuzz_blocker_idxs = {json.dumps(blocker_idxs)};" html_end += "</script>" html_end += "<script src=\"prism.js\"></script>" html_end += "<script src=\"clike.js\"></script>" html_end += "<script src=\"calltree.js\"></script>" complete_html_string += html_end complete_html_string += "</body></html>" # Beautify and write HTML soup = bs(complete_html_string, 'lxml') pretty_html = soup.prettify() with open(filename, "w+") as cf: cf.write(pretty_html) def create_str_node_ctx_idx(self, cov_ct_idx): prefixed_zeros = "0" * (len("00000") - len(cov_ct_idx)) return f"{prefixed_zeros}{cov_ct_idx}" def get_fuzz_blockers( self, profile: fuzz_data_loader.
25
36
0
7,895
ossf__fuzz-introspector
4867924b714a7789f94fbcde53713a29ceab7272
post-processing/analyses/fuzz_calltree_analysis.py
inproject
CalltreeCallsite
true
class
9
9
false
true
[ "extract_all_callsites", "List", "None", "logger", "Optional", "CalltreeCallsite", "data_file_read_calltree", "extract_all_callsites_recursive", "print_ctcs_tree" ]
[ { "name": "CalltreeCallsite", "type": "class" }, { "name": "data_file_read_calltree", "type": "function" }, { "name": "extract_all_callsites", "type": "function" }, { "name": "extract_all_callsites_recursive", "type": "function" }, { "name": "List", "type": "class" }, { "name": "logger", "type": "statement" }, { "name": "logging", "type": "module" }, { "name": "Optional", "type": "class" }, { "name": "print_ctcs_tree", "type": "function" }, { "name": "__doc__", "type": "instance" }, { "name": "__file__", "type": "instance" }, { "name": "__name__", "type": "instance" }, { "name": "__package__", "type": "instance" } ]
# Copyright 2022 Fuzz Introspector Authors # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. """Logic related to calltree analysis""" import os import logging import json from typing import ( List, Tuple, Optional, Set, ) import fuzz_analysis import fuzz_data_loader import fuzz_utils import fuzz_cfg_load import fuzz_html_helpers # For pretty printing the html code: from bs4 import BeautifulSoup as bs logger = logging.getLogger(name=__name__) class FuzzCalltreeAnalysis(fuzz_analysis.AnalysisInterface): def __init__(self): self.name = "FuzzCalltreeAnalysis" logger.info("Creating FuzzCalltreeAnalysis") def analysis_func(self, toc_list: List[Tuple[str, str, int]], tables: List[str], project_profile: fuzz_data_loader.MergedProjectProfile, profiles: List[fuzz_data_loader.FuzzerProfile], basefolder: str, coverage_url: str, conclusions) -> str: """ Creates the HTML of the calltree. Returns the HTML as a string. """ logger.info("Not implemented") return "" def create_calltree(self, profile: fuzz_data_loader.FuzzerProfile) -> str: logger.info("In calltree") # Generate HTML for the calltree calltree_html_string = "<div class='section-wrapper'>" calltree_html_string += "<h1>Fuzzer calltree</h1>" nodes = fuzz_cfg_load.extract_all_callsites(profile.function_call_depths) for i in range(len(nodes)): node = nodes[i] demangled_name = fuzz_utils.demangle_cpp_func(node.dst_function_name) # We may not want to show certain functions at times, e.g. libc functions # in case it bloats the calltree # libc_funcs = { "free" } libc_funcs: Set[str] = set() avoid = len([fn for fn in libc_funcs if fn in demangled_name]) > 0 if avoid: continue # Prepare strings needed in the HTML color_to_be = node.cov_color callsite_link = node.cov_callsite_link link = node.cov_link ct_idx_str = self.create_str_node_ctx_idx(str(node.cov_ct_idx)) # Only display [function] link if we have, otherwhise show no [function] text. if node.dst_function_source_file.replace(" ", "") != "/": func_href = f"""<a href="{link}">[function]</a>""" else: func_href = "" if i > 0: previous_node = nodes[i - 1] if previous_node.depth == node.depth: calltree_html_string += "</div>" depth_diff = previous_node.depth - node.depth if depth_diff >= 1: closing_divs = "</div>" # To close "calltree-line-wrapper" closing_divs = "</div>" * (int(depth_diff) + 1) calltree_html_string += closing_divs calltree_html_string += f""" <div class="{color_to_be}-background coverage-line"> <span class="coverage-line-inner" data-calltree-idx="{ct_idx_str}"> {node.depth} <code class="language-clike"> {demangled_name} </code> <span class="coverage-line-filename"> {func_href} <a href="{callsite_link}"> [call site2] </a> <span class="calltree-idx">[calltree idx: {ct_idx_str}]</span> </span> </span> """ if i != len(nodes) - 1: next_node = nodes[i + 1] if next_node.depth > node.depth: calltree_html_string += f"""<div class="calltree-line-wrapper open level-{int(node.depth)}" style="padding-left: 16px">""" elif next_node.depth < node.depth: depth_diff = int(node.depth - next_node.depth) calltree_html_string += "</div>" * depth_diff calltree_html_string += "</div>" logger.info("Calltree created") # Write the HTML to a file called calltree_view_XX.html where XX is a counter. calltree_file_idx = 0 calltree_html_file = f"calltree_view_{calltree_file_idx}.html" while os.path.isfile(calltree_html_file): calltree_file_idx += 1 calltree_html_file = f"calltree_view_{calltree_file_idx}.html" self.html_create_dedicated_calltree_file( calltree_html_string, calltree_html_file, profile, ) return calltree_html_file def html_create_dedicated_calltree_file( self, calltree_html_string, filename, profile: fuzz_data_loader.FuzzerProfile): """ Write a wrapped HTML file with the tags needed from fuzz-introspector We use this only for wrapping calltrees at the moment, however, down the line it makes sense to have an easy wrapper for other HTML pages too. """ complete_html_string = "" # HTML start html_header = fuzz_html_helpers.html_get_header( calltree=True, title=f"Fuzz introspector: { profile.get_key() }" ) html_header += '<div class="content-section calltree-content-section">' complete_html_string += html_header # Display fuzz blocker at top of page fuzz_blockers = self.get_fuzz_blockers( profile, max_blockers_to_extract=12 ) fuzz_blocker_table = self.create_fuzz_blocker_table(profile, [], "", fuzz_blockers) if fuzz_blocker_table is not None: complete_html_string += "<div class=\"report-box\">" complete_html_string += "<h1>Fuzz blockers</h1>" complete_html_string += fuzz_blocker_table complete_html_string += "</div>" # Display calltree complete_html_string += calltree_html_string complete_html_string += "</div></div></div></div>" # HTML end html_end = '</div>' blocker_idxs = [] for node in fuzz_blockers: blocker_idxs.append(self.create_str_node_ctx_idx(str(node.cov_ct_idx))) if len(blocker_idxs) > 0: html_end = "<script>" html_end += f"var fuzz_blocker_idxs = {json.dumps(blocker_idxs)};" html_end += "</script>" html_end += "<script src=\"prism.js\"></script>" html_end += "<script src=\"clike.js\"></script>" html_end += "<script src=\"calltree.js\"></script>" complete_html_string += html_end complete_html_string += "</body></html>" # Beautify and write HTML soup = bs(complete_html_string, 'lxml') pretty_html = soup.prettify() with open(filename, "w+") as cf: cf.write(pretty_html) def create_str_node_ctx_idx(self, cov_ct_idx): prefixed_zeros = "0" * (len("00000") - len(cov_ct_idx)) return f"{prefixed_zeros}{cov_ct_idx}" def get_fuzz_blockers( self, profile: fuzz_data_loader.FuzzerProfile, max_blockers_to_extract=999): """Gets a list of fuzz blockers""" blocker_list: List[fuzz_cfg_load.
[ "extract_all_callsites", "List", "None", "logger", "Optional", "CalltreeCallsite", "data_file_read_calltree", "extract_all_callsites_recursive", "print_ctcs_tree" ]
tml_string += html_header # Display fuzz blocker at top of page fuzz_blockers = self.get_fuzz_blockers( profile, max_blockers_to_extract=12 ) fuzz_blocker_table = self.create_fuzz_blocker_table(profile, [], "", fuzz_blockers) if fuzz_blocker_table is not None: complete_html_string += "<div class=\"report-box\">" complete_html_string += "<h1>Fuzz blockers</h1>" complete_html_string += fuzz_blocker_table complete_html_string += "</div>" # Display calltree complete_html_string += calltree_html_string complete_html_string += "</div></div></div></div>" # HTML end html_end = '</div>' blocker_idxs = [] for node in fuzz_blockers: blocker_idxs.append(self.create_str_node_ctx_idx(str(node.cov_ct_idx))) if len(blocker_idxs) > 0: html_end = "<script>" html_end += f"var fuzz_blocker_idxs = {json.dumps(blocker_idxs)};" html_end += "</script>" html_end += "<script src=\"prism.js\"></script>" html_end += "<script src=\"clike.js\"></script>" html_end += "<script src=\"calltree.js\"></script>" complete_html_string += html_end complete_html_string += "</body></html>" # Beautify and write HTML soup = bs(complete_html_string, 'lxml') pretty_html = soup.prettify() with open(filename, "w+") as cf: cf.write(pretty_html) def create_str_node_ctx_idx(self, cov_ct_idx): prefixed_zeros = "0" * (len("00000") - len(cov_ct_idx)) return f"{prefixed_zeros}{cov_ct_idx}" def get_fuzz_blockers( self, profile: fuzz_data_loader.FuzzerProfile, max_blockers_to_extract=999): """Gets a list of fuzz blockers""" blocker_list: List[fuzz_cfg_load.
26
37
0
8,028
ossf__fuzz-introspector
4867924b714a7789f94fbcde53713a29ceab7272
post-processing/analyses/fuzz_calltree_analysis.py
inproject
extract_all_callsites
true
function
8
9
false
false
[ "extract_all_callsites", "CalltreeCallsite", "List", "logger", "extract_all_callsites_recursive", "data_file_read_calltree", "print_ctcs_tree", "Optional" ]
[ { "name": "CalltreeCallsite", "type": "class" }, { "name": "data_file_read_calltree", "type": "function" }, { "name": "extract_all_callsites", "type": "function" }, { "name": "extract_all_callsites_recursive", "type": "function" }, { "name": "List", "type": "class" }, { "name": "logger", "type": "statement" }, { "name": "logging", "type": "module" }, { "name": "Optional", "type": "class" }, { "name": "print_ctcs_tree", "type": "function" }, { "name": "__doc__", "type": "instance" }, { "name": "__file__", "type": "instance" }, { "name": "__name__", "type": "instance" }, { "name": "__package__", "type": "instance" } ]
# Copyright 2022 Fuzz Introspector Authors # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. """Logic related to calltree analysis""" import os import logging import json from typing import ( List, Tuple, Optional, Set, ) import fuzz_analysis import fuzz_data_loader import fuzz_utils import fuzz_cfg_load import fuzz_html_helpers # For pretty printing the html code: from bs4 import BeautifulSoup as bs logger = logging.getLogger(name=__name__) class FuzzCalltreeAnalysis(fuzz_analysis.AnalysisInterface): def __init__(self): self.name = "FuzzCalltreeAnalysis" logger.info("Creating FuzzCalltreeAnalysis") def analysis_func(self, toc_list: List[Tuple[str, str, int]], tables: List[str], project_profile: fuzz_data_loader.MergedProjectProfile, profiles: List[fuzz_data_loader.FuzzerProfile], basefolder: str, coverage_url: str, conclusions) -> str: """ Creates the HTML of the calltree. Returns the HTML as a string. """ logger.info("Not implemented") return "" def create_calltree(self, profile: fuzz_data_loader.FuzzerProfile) -> str: logger.info("In calltree") # Generate HTML for the calltree calltree_html_string = "<div class='section-wrapper'>" calltree_html_string += "<h1>Fuzzer calltree</h1>" nodes = fuzz_cfg_load.extract_all_callsites(profile.function_call_depths) for i in range(len(nodes)): node = nodes[i] demangled_name = fuzz_utils.demangle_cpp_func(node.dst_function_name) # We may not want to show certain functions at times, e.g. libc functions # in case it bloats the calltree # libc_funcs = { "free" } libc_funcs: Set[str] = set() avoid = len([fn for fn in libc_funcs if fn in demangled_name]) > 0 if avoid: continue # Prepare strings needed in the HTML color_to_be = node.cov_color callsite_link = node.cov_callsite_link link = node.cov_link ct_idx_str = self.create_str_node_ctx_idx(str(node.cov_ct_idx)) # Only display [function] link if we have, otherwhise show no [function] text. if node.dst_function_source_file.replace(" ", "") != "/": func_href = f"""<a href="{link}">[function]</a>""" else: func_href = "" if i > 0: previous_node = nodes[i - 1] if previous_node.depth == node.depth: calltree_html_string += "</div>" depth_diff = previous_node.depth - node.depth if depth_diff >= 1: closing_divs = "</div>" # To close "calltree-line-wrapper" closing_divs = "</div>" * (int(depth_diff) + 1) calltree_html_string += closing_divs calltree_html_string += f""" <div class="{color_to_be}-background coverage-line"> <span class="coverage-line-inner" data-calltree-idx="{ct_idx_str}"> {node.depth} <code class="language-clike"> {demangled_name} </code> <span class="coverage-line-filename"> {func_href} <a href="{callsite_link}"> [call site2] </a> <span class="calltree-idx">[calltree idx: {ct_idx_str}]</span> </span> </span> """ if i != len(nodes) - 1: next_node = nodes[i + 1] if next_node.depth > node.depth: calltree_html_string += f"""<div class="calltree-line-wrapper open level-{int(node.depth)}" style="padding-left: 16px">""" elif next_node.depth < node.depth: depth_diff = int(node.depth - next_node.depth) calltree_html_string += "</div>" * depth_diff calltree_html_string += "</div>" logger.info("Calltree created") # Write the HTML to a file called calltree_view_XX.html where XX is a counter. calltree_file_idx = 0 calltree_html_file = f"calltree_view_{calltree_file_idx}.html" while os.path.isfile(calltree_html_file): calltree_file_idx += 1 calltree_html_file = f"calltree_view_{calltree_file_idx}.html" self.html_create_dedicated_calltree_file( calltree_html_string, calltree_html_file, profile, ) return calltree_html_file def html_create_dedicated_calltree_file( self, calltree_html_string, filename, profile: fuzz_data_loader.FuzzerProfile): """ Write a wrapped HTML file with the tags needed from fuzz-introspector We use this only for wrapping calltrees at the moment, however, down the line it makes sense to have an easy wrapper for other HTML pages too. """ complete_html_string = "" # HTML start html_header = fuzz_html_helpers.html_get_header( calltree=True, title=f"Fuzz introspector: { profile.get_key() }" ) html_header += '<div class="content-section calltree-content-section">' complete_html_string += html_header # Display fuzz blocker at top of page fuzz_blockers = self.get_fuzz_blockers( profile, max_blockers_to_extract=12 ) fuzz_blocker_table = self.create_fuzz_blocker_table(profile, [], "", fuzz_blockers) if fuzz_blocker_table is not None: complete_html_string += "<div class=\"report-box\">" complete_html_string += "<h1>Fuzz blockers</h1>" complete_html_string += fuzz_blocker_table complete_html_string += "</div>" # Display calltree complete_html_string += calltree_html_string complete_html_string += "</div></div></div></div>" # HTML end html_end = '</div>' blocker_idxs = [] for node in fuzz_blockers: blocker_idxs.append(self.create_str_node_ctx_idx(str(node.cov_ct_idx))) if len(blocker_idxs) > 0: html_end = "<script>" html_end += f"var fuzz_blocker_idxs = {json.dumps(blocker_idxs)};" html_end += "</script>" html_end += "<script src=\"prism.js\"></script>" html_end += "<script src=\"clike.js\"></script>" html_end += "<script src=\"calltree.js\"></script>" complete_html_string += html_end complete_html_string += "</body></html>" # Beautify and write HTML soup = bs(complete_html_string, 'lxml') pretty_html = soup.prettify() with open(filename, "w+") as cf: cf.write(pretty_html) def create_str_node_ctx_idx(self, cov_ct_idx): prefixed_zeros = "0" * (len("00000") - len(cov_ct_idx)) return f"{prefixed_zeros}{cov_ct_idx}" def get_fuzz_blockers( self, profile: fuzz_data_loader.FuzzerProfile, max_blockers_to_extract=999): """Gets a list of fuzz blockers""" blocker_list: List[fuzz_cfg_load.CalltreeCallsite] = list() # Extract all callsites in calltree and exit early if none all_callsites = fuzz_cfg_load.
[ "extract_all_callsites", "CalltreeCallsite", "List", "logger", "extract_all_callsites_recursive", "data_file_read_calltree", "print_ctcs_tree", "Optional" ]
profile, max_blockers_to_extract=12 ) fuzz_blocker_table = self.create_fuzz_blocker_table(profile, [], "", fuzz_blockers) if fuzz_blocker_table is not None: complete_html_string += "<div class=\"report-box\">" complete_html_string += "<h1>Fuzz blockers</h1>" complete_html_string += fuzz_blocker_table complete_html_string += "</div>" # Display calltree complete_html_string += calltree_html_string complete_html_string += "</div></div></div></div>" # HTML end html_end = '</div>' blocker_idxs = [] for node in fuzz_blockers: blocker_idxs.append(self.create_str_node_ctx_idx(str(node.cov_ct_idx))) if len(blocker_idxs) > 0: html_end = "<script>" html_end += f"var fuzz_blocker_idxs = {json.dumps(blocker_idxs)};" html_end += "</script>" html_end += "<script src=\"prism.js\"></script>" html_end += "<script src=\"clike.js\"></script>" html_end += "<script src=\"calltree.js\"></script>" complete_html_string += html_end complete_html_string += "</body></html>" # Beautify and write HTML soup = bs(complete_html_string, 'lxml') pretty_html = soup.prettify() with open(filename, "w+") as cf: cf.write(pretty_html) def create_str_node_ctx_idx(self, cov_ct_idx): prefixed_zeros = "0" * (len("00000") - len(cov_ct_idx)) return f"{prefixed_zeros}{cov_ct_idx}" def get_fuzz_blockers( self, profile: fuzz_data_loader.FuzzerProfile, max_blockers_to_extract=999): """Gets a list of fuzz blockers""" blocker_list: List[fuzz_cfg_load.CalltreeCallsite] = list() # Extract all callsites in calltree and exit early if none all_callsites = fuzz_cfg_load.
27
41
0
9,121
ossf__fuzz-introspector
4867924b714a7789f94fbcde53713a29ceab7272
post-processing/analyses/fuzz_calltree_analysis.py
infile
get_fuzz_blockers
true
function
7
7
false
false
[ "get_fuzz_blockers", "create_fuzz_blocker_table", "name", "create_str_node_ctx_idx", "html_create_dedicated_calltree_file", "__init__", "analysis_func", "create_calltree", "__annotations__", "__class__", "__delattr__", "__dict__", "__dir__", "__eq__", "__format__", "__getattribute__", "__hash__", "__init_subclass__", "__ne__", "__new__", "__reduce__", "__reduce_ex__", "__repr__", "__setattr__", "__sizeof__", "__slots__", "__str__", "__subclasshook__", "__doc__", "__module__" ]
[ { "name": "analysis_func", "type": "function" }, { "name": "create_calltree", "type": "function" }, { "name": "create_fuzz_blocker_table", "type": "function" }, { "name": "create_str_node_ctx_idx", "type": "function" }, { "name": "get_fuzz_blockers", "type": "function" }, { "name": "html_create_dedicated_calltree_file", "type": "function" }, { "name": "name", "type": "statement" }, { "name": "__annotations__", "type": "statement" }, { "name": "__class__", "type": "property" }, { "name": "__delattr__", "type": "function" }, { "name": "__dict__", "type": "statement" }, { "name": "__dir__", "type": "function" }, { "name": "__doc__", "type": "statement" }, { "name": "__eq__", "type": "function" }, { "name": "__format__", "type": "function" }, { "name": "__getattribute__", "type": "function" }, { "name": "__hash__", "type": "function" }, { "name": "__init__", "type": "function" }, { "name": "__init_subclass__", "type": "function" }, { "name": "__module__", "type": "statement" }, { "name": "__ne__", "type": "function" }, { "name": "__new__", "type": "function" }, { "name": "__reduce__", "type": "function" }, { "name": "__reduce_ex__", "type": "function" }, { "name": "__repr__", "type": "function" }, { "name": "__setattr__", "type": "function" }, { "name": "__sizeof__", "type": "function" }, { "name": "__slots__", "type": "statement" }, { "name": "__str__", "type": "function" } ]
# Copyright 2022 Fuzz Introspector Authors # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. """Logic related to calltree analysis""" import os import logging import json from typing import ( List, Tuple, Optional, Set, ) import fuzz_analysis import fuzz_data_loader import fuzz_utils import fuzz_cfg_load import fuzz_html_helpers # For pretty printing the html code: from bs4 import BeautifulSoup as bs logger = logging.getLogger(name=__name__) class FuzzCalltreeAnalysis(fuzz_analysis.AnalysisInterface): def __init__(self): self.name = "FuzzCalltreeAnalysis" logger.info("Creating FuzzCalltreeAnalysis") def analysis_func(self, toc_list: List[Tuple[str, str, int]], tables: List[str], project_profile: fuzz_data_loader.MergedProjectProfile, profiles: List[fuzz_data_loader.FuzzerProfile], basefolder: str, coverage_url: str, conclusions) -> str: """ Creates the HTML of the calltree. Returns the HTML as a string. """ logger.info("Not implemented") return "" def create_calltree(self, profile: fuzz_data_loader.FuzzerProfile) -> str: logger.info("In calltree") # Generate HTML for the calltree calltree_html_string = "<div class='section-wrapper'>" calltree_html_string += "<h1>Fuzzer calltree</h1>" nodes = fuzz_cfg_load.extract_all_callsites(profile.function_call_depths) for i in range(len(nodes)): node = nodes[i] demangled_name = fuzz_utils.demangle_cpp_func(node.dst_function_name) # We may not want to show certain functions at times, e.g. libc functions # in case it bloats the calltree # libc_funcs = { "free" } libc_funcs: Set[str] = set() avoid = len([fn for fn in libc_funcs if fn in demangled_name]) > 0 if avoid: continue # Prepare strings needed in the HTML color_to_be = node.cov_color callsite_link = node.cov_callsite_link link = node.cov_link ct_idx_str = self.create_str_node_ctx_idx(str(node.cov_ct_idx)) # Only display [function] link if we have, otherwhise show no [function] text. if node.dst_function_source_file.replace(" ", "") != "/": func_href = f"""<a href="{link}">[function]</a>""" else: func_href = "" if i > 0: previous_node = nodes[i - 1] if previous_node.depth == node.depth: calltree_html_string += "</div>" depth_diff = previous_node.depth - node.depth if depth_diff >= 1: closing_divs = "</div>" # To close "calltree-line-wrapper" closing_divs = "</div>" * (int(depth_diff) + 1) calltree_html_string += closing_divs calltree_html_string += f""" <div class="{color_to_be}-background coverage-line"> <span class="coverage-line-inner" data-calltree-idx="{ct_idx_str}"> {node.depth} <code class="language-clike"> {demangled_name} </code> <span class="coverage-line-filename"> {func_href} <a href="{callsite_link}"> [call site2] </a> <span class="calltree-idx">[calltree idx: {ct_idx_str}]</span> </span> </span> """ if i != len(nodes) - 1: next_node = nodes[i + 1] if next_node.depth > node.depth: calltree_html_string += f"""<div class="calltree-line-wrapper open level-{int(node.depth)}" style="padding-left: 16px">""" elif next_node.depth < node.depth: depth_diff = int(node.depth - next_node.depth) calltree_html_string += "</div>" * depth_diff calltree_html_string += "</div>" logger.info("Calltree created") # Write the HTML to a file called calltree_view_XX.html where XX is a counter. calltree_file_idx = 0 calltree_html_file = f"calltree_view_{calltree_file_idx}.html" while os.path.isfile(calltree_html_file): calltree_file_idx += 1 calltree_html_file = f"calltree_view_{calltree_file_idx}.html" self.html_create_dedicated_calltree_file( calltree_html_string, calltree_html_file, profile, ) return calltree_html_file def html_create_dedicated_calltree_file( self, calltree_html_string, filename, profile: fuzz_data_loader.FuzzerProfile): """ Write a wrapped HTML file with the tags needed from fuzz-introspector We use this only for wrapping calltrees at the moment, however, down the line it makes sense to have an easy wrapper for other HTML pages too. """ complete_html_string = "" # HTML start html_header = fuzz_html_helpers.html_get_header( calltree=True, title=f"Fuzz introspector: { profile.get_key() }" ) html_header += '<div class="content-section calltree-content-section">' complete_html_string += html_header # Display fuzz blocker at top of page fuzz_blockers = self.get_fuzz_blockers( profile, max_blockers_to_extract=12 ) fuzz_blocker_table = self.create_fuzz_blocker_table(profile, [], "", fuzz_blockers) if fuzz_blocker_table is not None: complete_html_string += "<div class=\"report-box\">" complete_html_string += "<h1>Fuzz blockers</h1>" complete_html_string += fuzz_blocker_table complete_html_string += "</div>" # Display calltree complete_html_string += calltree_html_string complete_html_string += "</div></div></div></div>" # HTML end html_end = '</div>' blocker_idxs = [] for node in fuzz_blockers: blocker_idxs.append(self.create_str_node_ctx_idx(str(node.cov_ct_idx))) if len(blocker_idxs) > 0: html_end = "<script>" html_end += f"var fuzz_blocker_idxs = {json.dumps(blocker_idxs)};" html_end += "</script>" html_end += "<script src=\"prism.js\"></script>" html_end += "<script src=\"clike.js\"></script>" html_end += "<script src=\"calltree.js\"></script>" complete_html_string += html_end complete_html_string += "</body></html>" # Beautify and write HTML soup = bs(complete_html_string, 'lxml') pretty_html = soup.prettify() with open(filename, "w+") as cf: cf.write(pretty_html) def create_str_node_ctx_idx(self, cov_ct_idx): prefixed_zeros = "0" * (len("00000") - len(cov_ct_idx)) return f"{prefixed_zeros}{cov_ct_idx}" def get_fuzz_blockers( self, profile: fuzz_data_loader.FuzzerProfile, max_blockers_to_extract=999): """Gets a list of fuzz blockers""" blocker_list: List[fuzz_cfg_load.CalltreeCallsite] = list() # Extract all callsites in calltree and exit early if none all_callsites = fuzz_cfg_load.extract_all_callsites(profile.function_call_depths) if len(all_callsites) == 0: return blocker_list # Filter nodes that has forward reds. Extract maximum max_blockers_to_extract nodes. nodes_sorted_by_red_ahead = sorted(all_callsites, key=lambda x: x.cov_forward_reds, reverse=True) for node in nodes_sorted_by_red_ahead: if node.cov_forward_reds == 0 or len(blocker_list) >= max_blockers_to_extract: break blocker_list.append(node) return blocker_list def create_fuzz_blocker_table( self, profile: fuzz_data_loader.FuzzerProfile, tables: List[str], calltree_file_name: str, fuzz_blockers=None) -> Optional[str]: """ Creates HTML string for table showing fuzz blockers. """ logger.info("Creating fuzz blocker table") # Get the fuzz blockers if fuzz_blockers is None: fuzz_blockers = self.
[ "get_fuzz_blockers", "create_fuzz_blocker_table", "name", "create_str_node_ctx_idx", "html_create_dedicated_calltree_file", "analysis_func", "create_calltree" ]
ee.js\"></script>" complete_html_string += html_end complete_html_string += "</body></html>" # Beautify and write HTML soup = bs(complete_html_string, 'lxml') pretty_html = soup.prettify() with open(filename, "w+") as cf: cf.write(pretty_html) def create_str_node_ctx_idx(self, cov_ct_idx): prefixed_zeros = "0" * (len("00000") - len(cov_ct_idx)) return f"{prefixed_zeros}{cov_ct_idx}" def get_fuzz_blockers( self, profile: fuzz_data_loader.FuzzerProfile, max_blockers_to_extract=999): """Gets a list of fuzz blockers""" blocker_list: List[fuzz_cfg_load.CalltreeCallsite] = list() # Extract all callsites in calltree and exit early if none all_callsites = fuzz_cfg_load.extract_all_callsites(profile.function_call_depths) if len(all_callsites) == 0: return blocker_list # Filter nodes that has forward reds. Extract maximum max_blockers_to_extract nodes. nodes_sorted_by_red_ahead = sorted(all_callsites, key=lambda x: x.cov_forward_reds, reverse=True) for node in nodes_sorted_by_red_ahead: if node.cov_forward_reds == 0 or len(blocker_list) >= max_blockers_to_extract: break blocker_list.append(node) return blocker_list def create_fuzz_blocker_table( self, profile: fuzz_data_loader.FuzzerProfile, tables: List[str], calltree_file_name: str, fuzz_blockers=None) -> Optional[str]: """ Creates HTML string for table showing fuzz blockers. """ logger.info("Creating fuzz blocker table") # Get the fuzz blockers if fuzz_blockers is None: fuzz_blockers = self.
30
42
0
9,537
ossf__fuzz-introspector
4867924b714a7789f94fbcde53713a29ceab7272
post-processing/analyses/fuzz_calltree_analysis.py
inproject
html_create_table_head
true
function
9
9
false
true
[ "html_table_add_row", "html_get_header", "html_create_table_head", "html_get_table_of_contents", "html_get_navbar", "html_add_header_with_link", "Any", "List", "Tuple" ]
[ { "name": "Any", "type": "class" }, { "name": "html_add_header_with_link", "type": "function" }, { "name": "html_create_table_head", "type": "function" }, { "name": "html_get_header", "type": "function" }, { "name": "html_get_navbar", "type": "function" }, { "name": "html_get_table_of_contents", "type": "function" }, { "name": "html_table_add_row", "type": "function" }, { "name": "List", "type": "class" }, { "name": "Tuple", "type": "class" }, { "name": "__doc__", "type": "instance" }, { "name": "__file__", "type": "instance" }, { "name": "__name__", "type": "instance" }, { "name": "__package__", "type": "instance" } ]
# Copyright 2022 Fuzz Introspector Authors # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. """Logic related to calltree analysis""" import os import logging import json from typing import ( List, Tuple, Optional, Set, ) import fuzz_analysis import fuzz_data_loader import fuzz_utils import fuzz_cfg_load import fuzz_html_helpers # For pretty printing the html code: from bs4 import BeautifulSoup as bs logger = logging.getLogger(name=__name__) class FuzzCalltreeAnalysis(fuzz_analysis.AnalysisInterface): def __init__(self): self.name = "FuzzCalltreeAnalysis" logger.info("Creating FuzzCalltreeAnalysis") def analysis_func(self, toc_list: List[Tuple[str, str, int]], tables: List[str], project_profile: fuzz_data_loader.MergedProjectProfile, profiles: List[fuzz_data_loader.FuzzerProfile], basefolder: str, coverage_url: str, conclusions) -> str: """ Creates the HTML of the calltree. Returns the HTML as a string. """ logger.info("Not implemented") return "" def create_calltree(self, profile: fuzz_data_loader.FuzzerProfile) -> str: logger.info("In calltree") # Generate HTML for the calltree calltree_html_string = "<div class='section-wrapper'>" calltree_html_string += "<h1>Fuzzer calltree</h1>" nodes = fuzz_cfg_load.extract_all_callsites(profile.function_call_depths) for i in range(len(nodes)): node = nodes[i] demangled_name = fuzz_utils.demangle_cpp_func(node.dst_function_name) # We may not want to show certain functions at times, e.g. libc functions # in case it bloats the calltree # libc_funcs = { "free" } libc_funcs: Set[str] = set() avoid = len([fn for fn in libc_funcs if fn in demangled_name]) > 0 if avoid: continue # Prepare strings needed in the HTML color_to_be = node.cov_color callsite_link = node.cov_callsite_link link = node.cov_link ct_idx_str = self.create_str_node_ctx_idx(str(node.cov_ct_idx)) # Only display [function] link if we have, otherwhise show no [function] text. if node.dst_function_source_file.replace(" ", "") != "/": func_href = f"""<a href="{link}">[function]</a>""" else: func_href = "" if i > 0: previous_node = nodes[i - 1] if previous_node.depth == node.depth: calltree_html_string += "</div>" depth_diff = previous_node.depth - node.depth if depth_diff >= 1: closing_divs = "</div>" # To close "calltree-line-wrapper" closing_divs = "</div>" * (int(depth_diff) + 1) calltree_html_string += closing_divs calltree_html_string += f""" <div class="{color_to_be}-background coverage-line"> <span class="coverage-line-inner" data-calltree-idx="{ct_idx_str}"> {node.depth} <code class="language-clike"> {demangled_name} </code> <span class="coverage-line-filename"> {func_href} <a href="{callsite_link}"> [call site2] </a> <span class="calltree-idx">[calltree idx: {ct_idx_str}]</span> </span> </span> """ if i != len(nodes) - 1: next_node = nodes[i + 1] if next_node.depth > node.depth: calltree_html_string += f"""<div class="calltree-line-wrapper open level-{int(node.depth)}" style="padding-left: 16px">""" elif next_node.depth < node.depth: depth_diff = int(node.depth - next_node.depth) calltree_html_string += "</div>" * depth_diff calltree_html_string += "</div>" logger.info("Calltree created") # Write the HTML to a file called calltree_view_XX.html where XX is a counter. calltree_file_idx = 0 calltree_html_file = f"calltree_view_{calltree_file_idx}.html" while os.path.isfile(calltree_html_file): calltree_file_idx += 1 calltree_html_file = f"calltree_view_{calltree_file_idx}.html" self.html_create_dedicated_calltree_file( calltree_html_string, calltree_html_file, profile, ) return calltree_html_file def html_create_dedicated_calltree_file( self, calltree_html_string, filename, profile: fuzz_data_loader.FuzzerProfile): """ Write a wrapped HTML file with the tags needed from fuzz-introspector We use this only for wrapping calltrees at the moment, however, down the line it makes sense to have an easy wrapper for other HTML pages too. """ complete_html_string = "" # HTML start html_header = fuzz_html_helpers.html_get_header( calltree=True, title=f"Fuzz introspector: { profile.get_key() }" ) html_header += '<div class="content-section calltree-content-section">' complete_html_string += html_header # Display fuzz blocker at top of page fuzz_blockers = self.get_fuzz_blockers( profile, max_blockers_to_extract=12 ) fuzz_blocker_table = self.create_fuzz_blocker_table(profile, [], "", fuzz_blockers) if fuzz_blocker_table is not None: complete_html_string += "<div class=\"report-box\">" complete_html_string += "<h1>Fuzz blockers</h1>" complete_html_string += fuzz_blocker_table complete_html_string += "</div>" # Display calltree complete_html_string += calltree_html_string complete_html_string += "</div></div></div></div>" # HTML end html_end = '</div>' blocker_idxs = [] for node in fuzz_blockers: blocker_idxs.append(self.create_str_node_ctx_idx(str(node.cov_ct_idx))) if len(blocker_idxs) > 0: html_end = "<script>" html_end += f"var fuzz_blocker_idxs = {json.dumps(blocker_idxs)};" html_end += "</script>" html_end += "<script src=\"prism.js\"></script>" html_end += "<script src=\"clike.js\"></script>" html_end += "<script src=\"calltree.js\"></script>" complete_html_string += html_end complete_html_string += "</body></html>" # Beautify and write HTML soup = bs(complete_html_string, 'lxml') pretty_html = soup.prettify() with open(filename, "w+") as cf: cf.write(pretty_html) def create_str_node_ctx_idx(self, cov_ct_idx): prefixed_zeros = "0" * (len("00000") - len(cov_ct_idx)) return f"{prefixed_zeros}{cov_ct_idx}" def get_fuzz_blockers( self, profile: fuzz_data_loader.FuzzerProfile, max_blockers_to_extract=999): """Gets a list of fuzz blockers""" blocker_list: List[fuzz_cfg_load.CalltreeCallsite] = list() # Extract all callsites in calltree and exit early if none all_callsites = fuzz_cfg_load.extract_all_callsites(profile.function_call_depths) if len(all_callsites) == 0: return blocker_list # Filter nodes that has forward reds. Extract maximum max_blockers_to_extract nodes. nodes_sorted_by_red_ahead = sorted(all_callsites, key=lambda x: x.cov_forward_reds, reverse=True) for node in nodes_sorted_by_red_ahead: if node.cov_forward_reds == 0 or len(blocker_list) >= max_blockers_to_extract: break blocker_list.append(node) return blocker_list def create_fuzz_blocker_table( self, profile: fuzz_data_loader.FuzzerProfile, tables: List[str], calltree_file_name: str, fuzz_blockers=None) -> Optional[str]: """ Creates HTML string for table showing fuzz blockers. """ logger.info("Creating fuzz blocker table") # Get the fuzz blockers if fuzz_blockers is None: fuzz_blockers = self.get_fuzz_blockers( profile, max_blockers_to_extract=12 ) if len(fuzz_blockers) == 0: return None html_table_string = "<p class='no-top-margin'>The followings nodes " \ "represent call sites where fuzz blockers occur</p>" tables.append(f"myTable{len(tables)}") html_table_string += fuzz_html_helpers.
[ "html_table_add_row", "html_get_header", "html_create_table_head", "html_get_table_of_contents", "html_get_navbar", "html_add_header_with_link", "Any", "List", "Tuple" ]
idx)) return f"{prefixed_zeros}{cov_ct_idx}" def get_fuzz_blockers( self, profile: fuzz_data_loader.FuzzerProfile, max_blockers_to_extract=999): """Gets a list of fuzz blockers""" blocker_list: List[fuzz_cfg_load.CalltreeCallsite] = list() # Extract all callsites in calltree and exit early if none all_callsites = fuzz_cfg_load.extract_all_callsites(profile.function_call_depths) if len(all_callsites) == 0: return blocker_list # Filter nodes that has forward reds. Extract maximum max_blockers_to_extract nodes. nodes_sorted_by_red_ahead = sorted(all_callsites, key=lambda x: x.cov_forward_reds, reverse=True) for node in nodes_sorted_by_red_ahead: if node.cov_forward_reds == 0 or len(blocker_list) >= max_blockers_to_extract: break blocker_list.append(node) return blocker_list def create_fuzz_blocker_table( self, profile: fuzz_data_loader.FuzzerProfile, tables: List[str], calltree_file_name: str, fuzz_blockers=None) -> Optional[str]: """ Creates HTML string for table showing fuzz blockers. """ logger.info("Creating fuzz blocker table") # Get the fuzz blockers if fuzz_blockers is None: fuzz_blockers = self.get_fuzz_blockers( profile, max_blockers_to_extract=12 ) if len(fuzz_blockers) == 0: return None html_table_string = "<p class='no-top-margin'>The followings nodes " \ "represent call sites where fuzz blockers occur</p>" tables.append(f"myTable{len(tables)}") html_table_string += fuzz_html_helpers.
31
45
0
10,653
ossf__fuzz-introspector
4867924b714a7789f94fbcde53713a29ceab7272
post-processing/analyses/fuzz_calltree_analysis.py
inproject
html_table_add_row
true
function
9
9
false
true
[ "html_create_table_head", "html_get_header", "List", "html_get_table_of_contents", "html_table_add_row", "html_add_header_with_link", "html_get_navbar", "Any", "Tuple" ]
[ { "name": "Any", "type": "class" }, { "name": "html_add_header_with_link", "type": "function" }, { "name": "html_create_table_head", "type": "function" }, { "name": "html_get_header", "type": "function" }, { "name": "html_get_navbar", "type": "function" }, { "name": "html_get_table_of_contents", "type": "function" }, { "name": "html_table_add_row", "type": "function" }, { "name": "List", "type": "class" }, { "name": "Tuple", "type": "class" }, { "name": "__doc__", "type": "instance" }, { "name": "__file__", "type": "instance" }, { "name": "__name__", "type": "instance" }, { "name": "__package__", "type": "instance" } ]
# Copyright 2022 Fuzz Introspector Authors # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. """Logic related to calltree analysis""" import os import logging import json from typing import ( List, Tuple, Optional, Set, ) import fuzz_analysis import fuzz_data_loader import fuzz_utils import fuzz_cfg_load import fuzz_html_helpers # For pretty printing the html code: from bs4 import BeautifulSoup as bs logger = logging.getLogger(name=__name__) class FuzzCalltreeAnalysis(fuzz_analysis.AnalysisInterface): def __init__(self): self.name = "FuzzCalltreeAnalysis" logger.info("Creating FuzzCalltreeAnalysis") def analysis_func(self, toc_list: List[Tuple[str, str, int]], tables: List[str], project_profile: fuzz_data_loader.MergedProjectProfile, profiles: List[fuzz_data_loader.FuzzerProfile], basefolder: str, coverage_url: str, conclusions) -> str: """ Creates the HTML of the calltree. Returns the HTML as a string. """ logger.info("Not implemented") return "" def create_calltree(self, profile: fuzz_data_loader.FuzzerProfile) -> str: logger.info("In calltree") # Generate HTML for the calltree calltree_html_string = "<div class='section-wrapper'>" calltree_html_string += "<h1>Fuzzer calltree</h1>" nodes = fuzz_cfg_load.extract_all_callsites(profile.function_call_depths) for i in range(len(nodes)): node = nodes[i] demangled_name = fuzz_utils.demangle_cpp_func(node.dst_function_name) # We may not want to show certain functions at times, e.g. libc functions # in case it bloats the calltree # libc_funcs = { "free" } libc_funcs: Set[str] = set() avoid = len([fn for fn in libc_funcs if fn in demangled_name]) > 0 if avoid: continue # Prepare strings needed in the HTML color_to_be = node.cov_color callsite_link = node.cov_callsite_link link = node.cov_link ct_idx_str = self.create_str_node_ctx_idx(str(node.cov_ct_idx)) # Only display [function] link if we have, otherwhise show no [function] text. if node.dst_function_source_file.replace(" ", "") != "/": func_href = f"""<a href="{link}">[function]</a>""" else: func_href = "" if i > 0: previous_node = nodes[i - 1] if previous_node.depth == node.depth: calltree_html_string += "</div>" depth_diff = previous_node.depth - node.depth if depth_diff >= 1: closing_divs = "</div>" # To close "calltree-line-wrapper" closing_divs = "</div>" * (int(depth_diff) + 1) calltree_html_string += closing_divs calltree_html_string += f""" <div class="{color_to_be}-background coverage-line"> <span class="coverage-line-inner" data-calltree-idx="{ct_idx_str}"> {node.depth} <code class="language-clike"> {demangled_name} </code> <span class="coverage-line-filename"> {func_href} <a href="{callsite_link}"> [call site2] </a> <span class="calltree-idx">[calltree idx: {ct_idx_str}]</span> </span> </span> """ if i != len(nodes) - 1: next_node = nodes[i + 1] if next_node.depth > node.depth: calltree_html_string += f"""<div class="calltree-line-wrapper open level-{int(node.depth)}" style="padding-left: 16px">""" elif next_node.depth < node.depth: depth_diff = int(node.depth - next_node.depth) calltree_html_string += "</div>" * depth_diff calltree_html_string += "</div>" logger.info("Calltree created") # Write the HTML to a file called calltree_view_XX.html where XX is a counter. calltree_file_idx = 0 calltree_html_file = f"calltree_view_{calltree_file_idx}.html" while os.path.isfile(calltree_html_file): calltree_file_idx += 1 calltree_html_file = f"calltree_view_{calltree_file_idx}.html" self.html_create_dedicated_calltree_file( calltree_html_string, calltree_html_file, profile, ) return calltree_html_file def html_create_dedicated_calltree_file( self, calltree_html_string, filename, profile: fuzz_data_loader.FuzzerProfile): """ Write a wrapped HTML file with the tags needed from fuzz-introspector We use this only for wrapping calltrees at the moment, however, down the line it makes sense to have an easy wrapper for other HTML pages too. """ complete_html_string = "" # HTML start html_header = fuzz_html_helpers.html_get_header( calltree=True, title=f"Fuzz introspector: { profile.get_key() }" ) html_header += '<div class="content-section calltree-content-section">' complete_html_string += html_header # Display fuzz blocker at top of page fuzz_blockers = self.get_fuzz_blockers( profile, max_blockers_to_extract=12 ) fuzz_blocker_table = self.create_fuzz_blocker_table(profile, [], "", fuzz_blockers) if fuzz_blocker_table is not None: complete_html_string += "<div class=\"report-box\">" complete_html_string += "<h1>Fuzz blockers</h1>" complete_html_string += fuzz_blocker_table complete_html_string += "</div>" # Display calltree complete_html_string += calltree_html_string complete_html_string += "</div></div></div></div>" # HTML end html_end = '</div>' blocker_idxs = [] for node in fuzz_blockers: blocker_idxs.append(self.create_str_node_ctx_idx(str(node.cov_ct_idx))) if len(blocker_idxs) > 0: html_end = "<script>" html_end += f"var fuzz_blocker_idxs = {json.dumps(blocker_idxs)};" html_end += "</script>" html_end += "<script src=\"prism.js\"></script>" html_end += "<script src=\"clike.js\"></script>" html_end += "<script src=\"calltree.js\"></script>" complete_html_string += html_end complete_html_string += "</body></html>" # Beautify and write HTML soup = bs(complete_html_string, 'lxml') pretty_html = soup.prettify() with open(filename, "w+") as cf: cf.write(pretty_html) def create_str_node_ctx_idx(self, cov_ct_idx): prefixed_zeros = "0" * (len("00000") - len(cov_ct_idx)) return f"{prefixed_zeros}{cov_ct_idx}" def get_fuzz_blockers( self, profile: fuzz_data_loader.FuzzerProfile, max_blockers_to_extract=999): """Gets a list of fuzz blockers""" blocker_list: List[fuzz_cfg_load.CalltreeCallsite] = list() # Extract all callsites in calltree and exit early if none all_callsites = fuzz_cfg_load.extract_all_callsites(profile.function_call_depths) if len(all_callsites) == 0: return blocker_list # Filter nodes that has forward reds. Extract maximum max_blockers_to_extract nodes. nodes_sorted_by_red_ahead = sorted(all_callsites, key=lambda x: x.cov_forward_reds, reverse=True) for node in nodes_sorted_by_red_ahead: if node.cov_forward_reds == 0 or len(blocker_list) >= max_blockers_to_extract: break blocker_list.append(node) return blocker_list def create_fuzz_blocker_table( self, profile: fuzz_data_loader.FuzzerProfile, tables: List[str], calltree_file_name: str, fuzz_blockers=None) -> Optional[str]: """ Creates HTML string for table showing fuzz blockers. """ logger.info("Creating fuzz blocker table") # Get the fuzz blockers if fuzz_blockers is None: fuzz_blockers = self.get_fuzz_blockers( profile, max_blockers_to_extract=12 ) if len(fuzz_blockers) == 0: return None html_table_string = "<p class='no-top-margin'>The followings nodes " \ "represent call sites where fuzz blockers occur</p>" tables.append(f"myTable{len(tables)}") html_table_string += fuzz_html_helpers.html_create_table_head( tables[-1], [ ("Amount of callsites blocked", "Total amount of callsites blocked"), ("Calltree index", "Index in call tree where the fuzz blocker is."), ("Parent function", "Function in which the call site that blocks resides."), ("Callsite", ""), ("Largest blocked function", "This is the function with highest cyclomatiic complexity amongst" "all of the functions that are blocked. As such, it's a way of " "highlighting a potentially important function being blocked") ], sort_by_column=0, sort_order="desc" ) for node in fuzz_blockers: link_prefix = "0" * (5 - len(str(node.cov_ct_idx))) node_link = "%s?scrollToNode=%s%s" % ( calltree_file_name, link_prefix, node.cov_ct_idx ) html_table_string += fuzz_html_helpers.
[ "html_create_table_head", "html_get_header", "List", "html_get_table_of_contents", "html_table_add_row", "html_add_header_with_link", "html_get_navbar", "Any", "Tuple" ]
: fuzz_data_loader.FuzzerProfile, tables: List[str], calltree_file_name: str, fuzz_blockers=None) -> Optional[str]: """ Creates HTML string for table showing fuzz blockers. """ logger.info("Creating fuzz blocker table") # Get the fuzz blockers if fuzz_blockers is None: fuzz_blockers = self.get_fuzz_blockers( profile, max_blockers_to_extract=12 ) if len(fuzz_blockers) == 0: return None html_table_string = "<p class='no-top-margin'>The followings nodes " \ "represent call sites where fuzz blockers occur</p>" tables.append(f"myTable{len(tables)}") html_table_string += fuzz_html_helpers.html_create_table_head( tables[-1], [ ("Amount of callsites blocked", "Total amount of callsites blocked"), ("Calltree index", "Index in call tree where the fuzz blocker is."), ("Parent function", "Function in which the call site that blocks resides."), ("Callsite", ""), ("Largest blocked function", "This is the function with highest cyclomatiic complexity amongst" "all of the functions that are blocked. As such, it's a way of " "highlighting a potentially important function being blocked") ], sort_by_column=0, sort_order="desc" ) for node in fuzz_blockers: link_prefix = "0" * (5 - len(str(node.cov_ct_idx))) node_link = "%s?scrollToNode=%s%s" % ( calltree_file_name, link_prefix, node.cov_ct_idx ) html_table_string += fuzz_html_helpers.
34
64
1
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vanheeringen-lab__seq2science
d5ff9782c8f6c4cd989f74684154c508b7c65127
docs/scripts/clean_dags.py
infile
type
true
statement
17
16
false
true
[ "edges", "nodes", "label2id", "name", "type", "__init__", "_get_node_id", "_order_edges", "color_node", "edge_style", "graph_style", "hide_node", "node_style", "remove_edge", "remove_node", "transitive_reduction", "write", "for", "__annotations__", "__class__", "__delattr__", "__dict__", "__dir__", "__eq__", "__format__", "__getattribute__", "__hash__", "__init_subclass__", "__ne__", "__new__", "__reduce__", "__reduce_ex__", "__repr__", "__setattr__", "__sizeof__", "__str__", "__subclasshook__", "__doc__", "__module__" ]
[ { "name": "color_node", "type": "function" }, { "name": "edge_style", "type": "statement" }, { "name": "edges", "type": "statement" }, { "name": "graph_style", "type": "statement" }, { "name": "hide_node", "type": "function" }, { "name": "label2id", "type": "statement" }, { "name": "name", "type": "statement" }, { "name": "node_style", "type": "statement" }, { "name": "nodes", "type": "statement" }, { "name": "remove_edge", "type": "function" }, { "name": "remove_node", "type": "function" }, { "name": "transitive_reduction", "type": "function" }, { "name": "type", "type": "statement" }, { "name": "write", "type": "function" }, { "name": "_get_node_id", "type": "function" }, { "name": "_order_edges", "type": "function" }, { "name": "__annotations__", "type": "statement" }, { "name": "__class__", "type": "property" }, { "name": "__delattr__", "type": "function" }, { "name": "__dict__", "type": "statement" }, { "name": "__dir__", "type": "function" }, { "name": "__doc__", "type": "statement" }, { "name": "__eq__", "type": "function" }, { "name": "__format__", "type": "function" }, { "name": "__getattribute__", "type": "function" }, { "name": "__hash__", "type": "function" }, { "name": "__init__", "type": "function" }, { "name": "__init_subclass__", "type": "function" }, { "name": "__module__", "type": "statement" }, { "name": "__ne__", "type": "function" }, { "name": "__new__", "type": "function" }, { "name": "__reduce__", "type": "function" }, { "name": "__reduce_ex__", "type": "function" }, { "name": "__repr__", "type": "function" }, { "name": "__setattr__", "type": "function" }, { "name": "__sizeof__", "type": "function" }, { "name": "__slots__", "type": "statement" }, { "name": "__str__", "type": "function" } ]
import re import networkx as nx rules_to_keep = { # "0.13 0.6 0.85", # yellow # "0.09 0.6 0.85", # brown # "0.28 0.6 0.85", # green # "0.04 0.6 0.85", # red # "0.00 0.6 0.85", # cherry # "0.63 0.6 0.85", # purple # "0.59 0.6 0.85", # dark blue # "0.58 0.6 0.85", # blue # "0.49 0.6 0.85", # teal # input "get_genome": "0.49 0.6 0.85", # teal "ena2fastq_SE": "0.49 0.6 0.85", # teal "ena2fastq_PE": "0.49 0.6 0.85", # teal "sra2fastq_SE": "0.49 0.6 0.85", # teal "sra2fastq_PE": "0.49 0.6 0.85", # teal # fastq "fastp_SE": "0.13 0.6 0.85", # yellow "fastp_PE": "0.13 0.6 0.85", # yellow "trimgalore_SE": "0.13 0.6 0.85", # yellow "trimgalore_PE": "0.13 0.6 0.85", # yellow "merge_replicates": "0.13 0.6 0.85", # yellow # align "bowtie2_align": "0.13 0.6 0.85", # yellow "bwa_mem": "0.13 0.6 0.85", # yellow "bwa_mem2": "0.13 0.6 0.85", # yellow "hisat2_align": "0.13 0.6 0.85", # yellow "minimap2_align": "0.13 0.6 0.85", # yellow "star_align": "0.13 0.6 0.85", # yellow "mark_duplicates": "0.13 0.6 0.85", # yellow "sieve_bam": "0.13 0.6 0.85", # yellow # peak counting "macs2_callpeak": "0.13 0.6 0.85", # yellow "call_peak_genrich": "0.13 0.6 0.85", # yellow "hmmratac": "0.13 0.6 0.85", # yellow "create_SNAP_object": "0.13 0.6 0.85", # yellow # gene counting/quantification "htseq_count": "0.13 0.6 0.85", # yellow "featurecounts": "0.13 0.6 0.85", # yellow "salmon_quant": "0.13 0.6 0.85", # yellow # trackhub "bam_bigwig": "0.00 0.6 0.85", # cherry "peak_bigpeak": "0.00 0.6 0.85", # cherry "bedgraph_bigwig": "0.00 0.6 0.85", # cherry "trackhub": "0.00 0.6 0.85", # cherry # multiqc "multiqc": "0.63 0.6 0.85", # purple # peak files "coverage_table": "0.28 0.6 0.85", # green "onehot_peaks": "0.28 0.6 0.85", # green "create_bins_SNAP_object": "0.28 0.6 0.85", # green # gene files "gene_id2name": "0.28 0.6 0.85", # green "tpm_matrix": "0.28 0.6 0.85", # green "count_matrix": "0.28 0.6 0.85", # green "txi_count_matrix": "0.28 0.6 0.85", # green "pytxi_count_matrix": "0.28 0.6 0.85", # green "citeseqcount": "0.28 0.6 0.85", # green "kallistobus_count": "0.28 0.6 0.85", # green # other "gimme_maelstrom": "0.28 0.6 0.85", # green "deseq2": "0.28 0.6 0.85", # green "dexseq_count_matrix": "0.28 0.6 0.85", # green } class Digraph: def __init__(self, infile): with open(infile) as f: lines = f.readlines() self.type, self.name = lines[0].split()[0:2] self.graph_style = lines[1] self.node_style = lines[2] self.edge_style = lines[3] self.nodes = dict() self.edges = set() self.label2id = dict() l = re.compile(r'label = "(.*?)"') c = re.compile(r'color = "(.*?)"') s = re.compile(r'style="(.*?)"') for line in lines[4:]: line = line.strip() # read edges edge = tuple(line.split(" -> ")) if len(edge) == 2: self.edges.add(edge) # read nodes elif "[" in line[:5]: node_id = line.split("[")[0] label = l.search(line).groups()[0] color = c.search(line).groups()[0] style = s.search(line).groups()[0] self.nodes[node_id] = { "label": label, "color": color, "style": style, } self.label2id[label] = node_id def _order_edges(self): """ edges are sorted by 1) ascending target nodes and 2) descending source nodes """ ordered = [] sources = sorted(set(int(e[0]) for e in list(self.edges)), reverse=True) targets = sorted(set(int(e[1]) for e in list(self.edges))) for target in targets: for source in sources: edge = (str(source), str(target)) if edge in self.edges: ordered.append(edge) return ordered def write(self, fname): with open(fname, "w") as f: f.write(" ".join([self.
[ "edges", "nodes", "label2id", "name", "type", "color_node", "edge_style", "graph_style", "hide_node", "node_style", "remove_edge", "remove_node", "transitive_reduction", "write", "for" ]
8 0.6 0.85", # green "deseq2": "0.28 0.6 0.85", # green "dexseq_count_matrix": "0.28 0.6 0.85", # green } class Digraph: def __init__(self, infile): with open(infile) as f: lines = f.readlines() self.type, self.name = lines[0].split()[0:2] self.graph_style = lines[1] self.node_style = lines[2] self.edge_style = lines[3] self.nodes = dict() self.edges = set() self.label2id = dict() l = re.compile(r'label = "(.*?)"') c = re.compile(r'color = "(.*?)"') s = re.compile(r'style="(.*?)"') for line in lines[4:]: line = line.strip() # read edges edge = tuple(line.split(" -> ")) if len(edge) == 2: self.edges.add(edge) # read nodes elif "[" in line[:5]: node_id = line.split("[")[0] label = l.search(line).groups()[0] color = c.search(line).groups()[0] style = s.search(line).groups()[0] self.nodes[node_id] = { "label": label, "color": color, "style": style, } self.label2id[label] = node_id def _order_edges(self): """ edges are sorted by 1) ascending target nodes and 2) descending source nodes """ ordered = [] sources = sorted(set(int(e[0]) for e in list(self.edges)), reverse=True) targets = sorted(set(int(e[1]) for e in list(self.edges))) for target in targets: for source in sources: edge = (str(source), str(target)) if edge in self.edges: ordered.append(edge) return ordered def write(self, fname): with open(fname, "w") as f: f.write(" ".join([self.
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