Dan Ofer's picture

Dan Ofer

GrimSqueaker

·

https://scholar.google.co.il/citations?user=uDx2ItYAAAAJ&hl=en

AI & ML interests

Bioinformatics, Neurobiology, AutoML, Feature engineering, Proteins, NLP

Organizations

upvoted an article about 2 months ago

Article

Train 400x faster Static Embedding Models with Sentence Transformers

Jan 15, 2025

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228

upvoted a paper 2 months ago

Evaluating Protein Transfer Learning with TAPE

Paper • 1906.08230 • Published Jun 19, 2019 • 1

upvoted 2 collections 2 months ago

PPI Datasets

Datasets related to protein-protein interaction, binding sites, or binding affinity. • 23 items • Updated Mar 2 • 6

Dayhoff Atlas

The models and datasets that comprise the Dayhoff Atlas • 10 items • Updated Jul 28, 2025 • 12

upvoted 2 collections 6 months ago

Omni-DNA

A family of cross-modal multi-task models ranging from 20 million to 1 billion parameters. • 14 items • Updated Feb 20, 2025 • 1

DNA language models

11 items • Updated 10 days ago • 11

upvoted a collection 7 months ago

GPN-Star

paper: https://www.biorxiv.org/content/10.1101/2025.09.21.677619v1 code: https://github.com/songlab-cal/gpn • 30 items • Updated Dec 7, 2025 • 8

upvoted an article 8 months ago

Article

Training and Finetuning Reranker Models with Sentence Transformers

Mar 26, 2025

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192

upvoted 2 articles 9 months ago

Article

Ettin Suite: SoTA Paired Encoders and Decoders

+4

Jul 16, 2025

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79

Article

Arc Virtual Cell Challenge: A Primer

Jul 18, 2025

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65

upvoted a collection 9 months ago

Encoders vs Decoders: the Ettin Suite

A collection of SOTA, open-data, paired encoder-only and decoder only models ranging from 17M params to 1B. See the paper at https://arxiv.org/abs/250 • 30 items • Updated Mar 2 • 28

upvoted a paper about 1 year ago

More Documents, Same Length: Isolating the Challenge of Multiple Documents in RAG

Paper • 2503.04388 • Published Mar 6, 2025 • 17

upvoted an article over 1 year ago

Article

The Open Medical-LLM Leaderboard: Benchmarking Large Language Models in Healthcare

+1

Apr 19, 2024

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196

upvoted 2 collections over 1 year ago

Llama 3.2

Meta's new Llama 3.2 vision and text models including 1B, 3B, 11B and 90B. Includes GGUF, 4-bit bnb and original versions. • 25 items • Updated 5 days ago • 68

Molmo

Artifacts for open multimodal language models. • 5 items • Updated Dec 23, 2025 • 309

upvoted an article almost 2 years ago

Article

Training and Finetuning Embedding Models with Sentence Transformers

May 28, 2024

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273

upvoted 2 papers over 2 years ago

Alpha-CLIP: A CLIP Model Focusing on Wherever You Want

Paper • 2312.03818 • Published Dec 6, 2023 • 34

Med-Flamingo: a Multimodal Medical Few-shot Learner

Paper • 2307.15189 • Published Jul 27, 2023 • 24