Add comprehensive model and results summary

comprehensive_summary.json

@@ -0,0 +1,39 @@
+{
+  "model_name": "FlowFinal",
+  "upload_date": "2025-08-29T14:56:47.572741",
+  "training_date": "20250829",
+  "total_sequences_generated": 80,
+  "hmd_amp_predictions": 7,
+  "hmd_amp_rate": 8.8,
+  "best_cfg_configuration": "strong_cfg (20% AMP rate)",
+  "training_details": {
+    "epochs": 2000,
+    "final_loss": 1.318,
+    "training_time": "2.3 hours",
+    "hardware": "H100",
+    "dataset_size": 6983
+  },
+  "uploaded_files": {
+    "model_components": 7,
+    "weight_files": 3,
+    "checkpoints": 3,
+    "paper_files": 3,
+    "training_logs": 5,
+    "datasets": 4,
+    "results": 5,
+    "embeddings": 4,
+    "decoded_sequences": 4,
+    "apex_results": 6
+  },
+  "total_files_uploaded": 44,
+  "repository_structure": {
+    "src/": "Main model implementation files",
+    "models/": "Trained model weights and checkpoints",
+    "paper/": "LaTeX files and paper documentation",
+    "training_logs/": "Complete training logs and scripts",
+    "datasets/": "Training datasets and protein sequences",
+    "results/": "Generated sequences and validation results",
+    "generated_samples/": "Raw embeddings and decoded sequences",
+    "analysis/": "APEX antimicrobial activity analysis"
+  }
+}